View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5838-Insertion-8 (Length: 245)
Name: NF5838-Insertion-8
Description: NF5838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5838-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 39915432 - 39915654
Alignment:
| Q |
7 |
caaaaagtatgtaaatacctttcaaaataaaaactagatatacactagcaagtagcaacggattcaaattttatttattttttctttcaaatatgatatt |
106 |
Q |
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| T |
39915432 |
caaaaagtatgtaaatacctttcaaaataaaaactagatatacactagcaa-------cggattcaaattttatttattttttctttcaaatatgatatt |
39915524 |
T |
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| Q |
107 |
ttaagttaaagttgttagtgtactattaaatattatatttctgaatacgtaactttcgttattgattccttagccagtgtggatactgattagtgattag |
206 |
Q |
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| T |
39915525 |
ttaagttaaagt---------actattaaatattatatttctgaatacgtaactttcgttattgattccttagccagtgtggatactgattagtgattag |
39915615 |
T |
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| Q |
207 |
catgattcaaaaaacttttcatattgttattcttagcag |
245 |
Q |
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| T |
39915616 |
catgattcaaaaaacttttcatattgttattcttagcag |
39915654 |
T |
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