View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5838_high_3 (Length: 228)
Name: NF5838_high_3
Description: NF5838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5838_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 31108952 - 31109176
Alignment:
| Q |
1 |
actatcatttgctctttgttttcatatgaatatattacaatgtcattaaattggatgttcaaaatcatagattggtcaatgtaatttgcgcaattgaaaa |
100 |
Q |
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| T |
31108952 |
actatcatttgctctttgttttcatatgaatatattacaatgttattaaattggatgttcaaaatcatagattggtcaatgtcatttgcgcaattgaaaa |
31109051 |
T |
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| Q |
101 |
taaggagatcaaaactgtggttttgttcnnnnnnnnnnggacgagagctgtattaaagcctctaatgtatataaaaaagagtgttgacacatgtgtaccc |
200 |
Q |
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||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31109052 |
taaggagatcaaaactgcggttttgtccaaaaaaaaaaggacgagagctgtattaaagcctctaatgtatataaaaaagagtgttgacacatgtgcaccc |
31109151 |
T |
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| Q |
201 |
ctatgtggcaatacacctcttacac |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
31109152 |
ctatgtggcaatacacctcttacac |
31109176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 18491907 - 18491851
Alignment:
| Q |
169 |
atataaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacac |
225 |
Q |
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| T |
18491907 |
atataaaaaagagtggtgatacatgtacacccccatgtggcaatacacctcttacac |
18491851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Original strand, 34895645 - 34895695
Alignment:
| Q |
175 |
aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacac |
225 |
Q |
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| T |
34895645 |
aaaagagtggtgatacatgtacacccccatgtggcaatacacctcttacac |
34895695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 41281876 - 41281928
Alignment:
| Q |
173 |
aaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacac |
225 |
Q |
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||||||||||| ||| |||||| ||||| || |||||||||||||||||||| |
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|
| T |
41281876 |
aaaaaagagtggtgatacatgtacacccccatatggcaatacacctcttacac |
41281928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 4190170 - 4190219
Alignment:
| Q |
176 |
aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacac |
225 |
Q |
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| T |
4190170 |
aaagagtggtgatacatgtatacccttatgtggcaatacacctcttacac |
4190219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 10457798 - 10457845
Alignment:
| Q |
177 |
aagagtgttgacacatgtgtacccctatgtggcaatacacctcttaca |
224 |
Q |
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| T |
10457798 |
aagagtgttgatacatgtataccctcatgtggcaatacacctcttaca |
10457845 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 31513483 - 31513434
Alignment:
| Q |
175 |
aaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttaca |
224 |
Q |
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| T |
31513483 |
aaaagagtggtgatacatgtacacccttatgtggcaatacacctcttaca |
31513434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 32728552 - 32728503
Alignment:
| Q |
176 |
aaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacac |
225 |
Q |
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| T |
32728552 |
aaagagtggtgatacatgtacacccccatgtggcaatacacctcttacac |
32728503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 35003492 - 35003440
Alignment:
| Q |
173 |
aaaaaagagtgttgacacatgtgtacccctatgtggcaatacacctcttacac |
225 |
Q |
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||||||||||| ||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
35003492 |
aaaaaagagtggtgatacatgcacacccccatgtggcaatacacctcttacac |
35003440 |
T |
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