View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5838_low_1 (Length: 566)

Name: NF5838_low_1
Description: NF5838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5838_low_1
NF5838_low_1
[»] chr6 (19 HSPs)
chr6 (41-439)||(31109508-31109889)
chr6 (447-558)||(31109216-31109325)
chr6 (447-533)||(9698350-9698436)
chr6 (447-533)||(21279926-21280012)
chr6 (450-533)||(13743238-13743321)
chr6 (450-533)||(13748738-13748821)
chr6 (452-558)||(27441544-27441648)
chr6 (450-533)||(30014343-30014426)
chr6 (447-533)||(21293694-21293780)
chr6 (449-533)||(3213399-3213483)
chr6 (450-533)||(33253913-33253996)
chr6 (449-558)||(33242402-33242509)
chr6 (449-533)||(7292746-7292830)
chr6 (449-533)||(7367548-7367632)
chr6 (449-533)||(26670026-26670110)
chr6 (1-32)||(31109905-31109936)
chr6 (3-32)||(31080096-31080125)
chr6 (449-533)||(7273352-7273436)
chr6 (449-533)||(26466798-26466882)
[»] chr4 (26 HSPs)
chr4 (450-558)||(55272370-55272476)
chr4 (449-532)||(28988472-28988555)
chr4 (450-558)||(17619146-17619252)
chr4 (448-558)||(32728355-32728463)
chr4 (449-558)||(711959-712066)
chr4 (452-558)||(38851515-38851619)
chr4 (449-530)||(960890-960971)
chr4 (452-533)||(35037007-35037088)
chr4 (449-533)||(1771283-1771367)
chr4 (449-533)||(27864563-27864647)
chr4 (449-533)||(55966363-55966447)
chr4 (452-533)||(3756263-3756344)
chr4 (452-533)||(27893859-27893940)
chr4 (448-533)||(48463467-48463552)
chr4 (449-504)||(46827752-46827807)
chr4 (451-533)||(41878407-41878489)
chr4 (447-533)||(48435596-48435682)
chr4 (448-530)||(49229684-49229766)
chr4 (452-533)||(43735744-43735825)
chr4 (450-530)||(27550309-27550389)
chr4 (449-533)||(33703140-33703224)
chr4 (450-533)||(35017733-35017815)
chr4 (452-533)||(31680904-31680985)
chr4 (452-533)||(43514703-43514784)
chr4 (450-530)||(12496956-12497036)
chr4 (449-533)||(25051692-25051776)
[»] chr1 (21 HSPs)
chr1 (448-558)||(45705823-45705931)
chr1 (450-558)||(48119628-48119734)
chr1 (449-558)||(44112676-44112783)
chr1 (450-558)||(35003294-35003400)
chr1 (450-558)||(46168383-46168489)
chr1 (449-558)||(45639726-45639833)
chr1 (450-558)||(38335918-38336024)
chr1 (447-532)||(750323-750408)
chr1 (449-533)||(5489775-5489859)
chr1 (447-558)||(45427739-45427848)
chr1 (448-558)||(38113189-38113297)
chr1 (448-558)||(41065151-41065259)
chr1 (449-531)||(26585461-26585543)
chr1 (450-558)||(35000107-35000213)
chr1 (450-533)||(37814778-37814861)
chr1 (450-533)||(43571103-43571186)
chr1 (452-533)||(2497579-2497660)
chr1 (452-533)||(7447828-7447908)
chr1 (449-533)||(48498979-48499063)
chr1 (449-504)||(14427346-14427401)
chr1 (449-533)||(23989540-23989625)
[»] chr8 (18 HSPs)
chr8 (449-558)||(34304787-34304894)
chr8 (448-558)||(18066712-18066820)
chr8 (449-558)||(35181515-35181622)
chr8 (452-533)||(26125637-26125718)
chr8 (447-558)||(16603620-16603729)
chr8 (449-533)||(36743500-36743584)
chr8 (450-533)||(11582766-11582849)
chr8 (450-533)||(29705362-29705445)
chr8 (447-533)||(29800967-29801053)
chr8 (447-533)||(20148757-20148843)
chr8 (447-533)||(31384661-31384747)
chr8 (451-558)||(16358827-16358933)
chr8 (449-530)||(30660762-30660843)
chr8 (449-533)||(5754902-5754986)
chr8 (452-558)||(33629987-33630091)
chr8 (447-533)||(2546993-2547079)
chr8 (449-483)||(19386637-19386671)
chr8 (452-533)||(42295197-42295278)
[»] chr3 (21 HSPs)
chr3 (449-558)||(9434123-9434230)
chr3 (449-558)||(10457886-10457993)
chr3 (450-533)||(36150130-36150213)
chr3 (450-533)||(45126945-45127028)
chr3 (449-558)||(4190259-4190366)
chr3 (451-533)||(42394436-42394518)
chr3 (449-557)||(52627972-52628078)
chr3 (449-533)||(46941052-46941136)
chr3 (448-558)||(25996266-25996374)
chr3 (447-533)||(53581875-53581961)
chr3 (451-533)||(54237097-54237179)
chr3 (450-558)||(34791829-34791935)
chr3 (449-533)||(24688419-24688503)
chr3 (450-533)||(42100688-42100771)
chr3 (449-533)||(40808864-40808948)
chr3 (447-533)||(25413678-25413764)
chr3 (486-551)||(51249344-51249407)
chr3 (452-533)||(27748565-27748646)
chr3 (450-558)||(51757593-51757699)
chr3 (449-533)||(47191043-47191126)
chr3 (449-533)||(54246165-54246249)
[»] chr5 (12 HSPs)
chr5 (449-533)||(7617132-7617216)
chr5 (447-558)||(17208071-17208180)
chr5 (450-558)||(32473388-32473494)
chr5 (449-533)||(38470578-38470662)
chr5 (449-558)||(30622713-30622819)
chr5 (450-533)||(2614666-2614749)
chr5 (450-533)||(22512305-22512388)
chr5 (450-533)||(41334680-41334763)
chr5 (452-533)||(5256997-5257078)
chr5 (449-533)||(18033981-18034065)
chr5 (449-533)||(33801468-33801552)
chr5 (450-502)||(33855091-33855143)
[»] chr2 (24 HSPs)
chr2 (449-559)||(16803967-16804075)
chr2 (449-559)||(16843249-16843357)
chr2 (452-558)||(41281968-41282072)
chr2 (449-558)||(43114556-43114663)
chr2 (452-558)||(11825648-11825752)
chr2 (447-533)||(8896600-8896686)
chr2 (451-533)||(19047158-19047240)
chr2 (452-533)||(6518486-6518566)
chr2 (450-558)||(12415454-12415560)
chr2 (450-558)||(12427514-12427620)
chr2 (447-558)||(18491702-18491811)
chr2 (449-558)||(966828-966935)
chr2 (451-551)||(34817777-34817875)
chr2 (447-533)||(42026764-42026852)
chr2 (450-518)||(16096747-16096815)
chr2 (450-551)||(13780736-13780835)
chr2 (466-558)||(4451944-4452034)
chr2 (448-533)||(30838630-30838715)
chr2 (447-532)||(43490419-43490504)
chr2 (449-533)||(34895758-34895842)
chr2 (450-533)||(1750414-1750497)
chr2 (452-533)||(4299437-4299518)
chr2 (449-533)||(12302270-12302354)
chr2 (449-533)||(43335780-43335864)
[»] chr7 (22 HSPs)
chr7 (449-558)||(40236918-40237025)
chr7 (451-558)||(31408627-31408732)
chr7 (450-558)||(31513287-31513393)
chr7 (450-533)||(24001029-24001112)
chr7 (449-558)||(33384869-33384977)
chr7 (450-533)||(42538448-42538531)
chr7 (450-533)||(42972852-42972935)
chr7 (447-533)||(24280613-24280699)
chr7 (447-533)||(43317440-43317526)
chr7 (452-533)||(10573751-10573832)
chr7 (447-533)||(44326175-44326261)
chr7 (448-533)||(5194248-5194333)
chr7 (449-502)||(27535279-27535332)
chr7 (452-533)||(43343641-43343722)
chr7 (452-533)||(44416951-44417032)
chr7 (449-533)||(5015394-5015478)
chr7 (450-533)||(5810941-5811024)
chr7 (450-517)||(39998408-39998475)
chr7 (447-533)||(9216299-9216384)
chr7 (452-533)||(4638216-4638297)
chr7 (448-533)||(35069719-35069804)
chr7 (449-498)||(41861673-41861722)
[»] scaffold0038 (1 HSPs)
scaffold0038 (451-533)||(112656-112738)
[»] scaffold0003 (1 HSPs)
scaffold0003 (452-558)||(45713-45817)
[»] scaffold0100 (1 HSPs)
scaffold0100 (450-558)||(35450-35556)
[»] scaffold0385 (1 HSPs)
scaffold0385 (449-533)||(11250-11334)
[»] scaffold0119 (1 HSPs)
scaffold0119 (449-533)||(684-768)
[»] scaffold0157 (1 HSPs)
scaffold0157 (450-530)||(23441-23521)


Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 41 - 439
Target Start/End: Complemental strand, 31109889 - 31109508
Alignment:
Q  41 aactgaaactgttatttcatcgcttgttaagtaccatgctgatatgccgatatgcaagcacaagttgatacaagctgtaaattgtaatttgtactacnnn 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       
T  31109889 aactgaaactgttatttcatcgcttgttaagtaccatgctgatatgccgatatgcaagcacaagttgatacaagctgtgaattgtaatttgtactacata 31109790  T
Q  141 nnnnnnnnnnnnnnnnnnnnaaagttgagttcaatttactgggtagtcatggaccattcagtcatatgaaaaatcgatgacatactctgttgttacagtt 240  Q
                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31109789 tagatatagatatagatataaaagttgagttcaatttactgggtagtcatggaccattcagtcatatgaaaaatcgatgacatactctgttgttacagtt 31109690  T
Q  241 gatgataagttcttttaagttgacaaaattacattttggatcatcaaggtttaccttatgagtgacaaacttatttaa---aaattttggatcactgatt 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||||||||          
T  31109689 gatgataagttcttttaagttgacaaaattacattttggatcatcaaggtttaccttatgagtgacaaacttatttaaattacattttggatca------ 31109596  T
Q  338 ttttcagcatattttaaaggttgtcaactgttaaatgtgtattccatacctaaaactttattgtttgtcatggctaaaatattgctaaaatttcacatct 437  Q
                  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31109595 --------------tcaaggttgtcaactgttaaatgtgtattccatacctaaaactttattgtttgtcatggctaaaatattgctaaaatttcacatct 31109510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 447 - 558
Target Start/End: Complemental strand, 31109325 - 31109216
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacacttt 546  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || |  |||||||| |||    
T  31109325 ataggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattcaactta--cgaccacatttt 31109228  T
Q  547 ctctttcatctc 558  Q
    ||||||||||||    
T  31109227 ctctttcatctc 31109216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 447 - 533
Target Start/End: Complemental strand, 9698436 - 9698350
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||||| |||||| || ||||| ||||| ||||||| ||| |  |||||||||||| ||| ||||||||||    
T  9698436 ataggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 9698350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 447 - 533
Target Start/End: Original strand, 21279926 - 21280012
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||||| |||||| |  |||||||||||  ||| |||||| |  |||||||||||| ||||||||||||||    
T  21279926 ataggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcac 21280012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 13743321 - 13743238
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| | |||| |||||||| | ||| ||||||||||| |  |||||||||||| ||| ||||||||||    
T  13743321 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcac 13743238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 13748821 - 13748738
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| | |||| |||||||| | ||| ||||||||||| |  |||||||||||| ||| ||||||||||    
T  13748821 ggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcac 13748738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 558
Target Start/End: Original strand, 27441544 - 27441648
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctctt 551  Q
    ||||||||||||||||| ||||||||||||||  | ||| |||| || ||| |  | |||||||||| |||||||||||||  | |||| ||||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctca--caaccatactttctctt 27441641  T
Q  552 tcatctc 558  Q
    |||||||    
T  27441642 tcatctc 27441648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 30014343 - 30014426
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| |||||| || ||||| |||||||||| |||||| |  ||| |||||||| ||| ||||||||||    
T  30014343 ggaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcac 30014426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 447 - 533
Target Start/End: Complemental strand, 21293780 - 21293694
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||| |||| |||||| ||||||||| || | ||||||||||| |  | |||||||||| ||||||||| ||||    
T  21293780 ataggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcatttcac 21293694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 3213399 - 3213483
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||| |||| |||||| ||||||||  |||| ||||||||||| |  | |||||||||| ||||||||| ||||    
T  3213399 aggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcac 3213483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 33253913 - 33253996
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| | |||||||| |||  | ||| |||||||||||||  ||||| || ||| ||||||||||||||    
T  33253913 ggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcac 33253996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 449 - 558
Target Start/End: Original strand, 33242402 - 33242509
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    |||||||||||||||||||| | ||||||||||||    ||| ||||||||||| |  | ||| |||||| |||||||||||||  | | || |||||||    
T  33242402 aggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctca--caaacatactttct 33242499  T
Q  549 ctttcatctc 558  Q
    ||||||||||    
T  33242500 ctttcatctc 33242509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 7292746 - 7292830
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||| ||||| | |||| |||||||   |||||||||||| ||| |  |||||||||||| ||| ||||||||||    
T  7292746 aggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcac 7292830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 7367548 - 7367632
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||| ||||||||| |||| |||||||   |||| |||| |||||| |  |||||||||||| ||| ||||||||||    
T  7367548 aggaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctcac 7367632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 26670110 - 26670026
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| |||||| || ||||   |||| |||||| |||| |  |||||||||||| ||| ||||||||||    
T  26670110 aggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 26670026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 31109936 - 31109905
Alignment:
Q  1 ggttggttctccaagaatctaatgttctgctt 32  Q
    ||||||||||||||||||||||||||||||||    
T  31109936 ggttggttctccaagaatctaatgttctgctt 31109905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 31080125 - 31080096
Alignment:
Q  3 ttggttctccaagaatctaatgttctgctt 32  Q
    ||||||||||||||||||||||||||||||    
T  31080125 ttggttctccaagaatctaatgttctgctt 31080096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 7273436 - 7273352
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| |||||| || ||||    ||| ||||||||||| |  || ||||||||| ||| ||||||||||    
T  7273436 aggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcac 7273352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 26466798 - 26466882
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||| |||| |||||| || ||||  ||||| ||||| ||||| |  |||| ||||||| ||| ||||||||||    
T  26466798 aggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcac 26466882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 450 - 558
Target Start/End: Complemental strand, 55272476 - 55272370
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    |||||||||||||||||||||||||||||||||| || ||| |||||||||||||  | |||||||||| |||||||||||||  | |||| ||||||||    
T  55272476 ggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctca--caaccatactttctc 55272379  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  55272378 tttcatctc 55272370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 449 - 532
Target Start/End: Original strand, 28988472 - 28988555
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctca 532  Q
    |||||||||||||||||||| |||||| |||||||   |||| |||||||||||||| ||||| ||||||||||||||||||||    
T  28988472 aggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctca 28988555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 450 - 558
Target Start/End: Complemental strand, 17619252 - 17619146
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    ||||||||||||||||||| | ||||||||||||  | ||| |||||||||||||  | |||||||||| |||||||||||||  | |||| ||||||||    
T  17619252 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctca--caaccatactttctc 17619155  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  17619154 tttcatctc 17619146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 448 - 558
Target Start/End: Original strand, 32728355 - 32728463
Alignment:
Q  448 taggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttc 547  Q
    ||||||||||||||||||||||||||||||||||||  | ||| |||||||||||||  | ||| |||||  |||||||||||||  | | || ||||||    
T  32728355 taggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctca--caatcatactttc 32728452  T
Q  548 tctttcatctc 558  Q
    |||||||||||    
T  32728453 tctttcatctc 32728463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 449 - 558
Target Start/End: Original strand, 711959 - 712066
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    |||||||||||||||||||| ||||||||||||||  | ||| ||||||| |||||  | |||||||||| |||||||||||||  | | || |||||||    
T  711959 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctca--caaacatactttct 712056  T
Q  549 ctttcatctc 558  Q
    ||||||||||    
T  712057 ctttcatctc 712066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 452 - 558
Target Start/End: Original strand, 38851515 - 38851619
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctctt 551  Q
    ||||||||||||||| |||||||||||||||||   | | ||||| |||||||  | ||| ||||||||||||||||||||  | |||| ||||||||||    
T  38851515 aaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctca--caaccatactttctctt 38851612  T
Q  552 tcatctc 558  Q
    |||||||    
T  38851613 tcatctc 38851619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 530
Target Start/End: Complemental strand, 960971 - 960890
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatct 530  Q
    |||||||||||||||||||| |||||||||||||| || ||| ||||||| || ||  ||||| |||||| |||||||||||    
T  960971 aggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatct 960890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 452 - 533
Target Start/End: Original strand, 35037007 - 35037088
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||| || ||||||| |||||| || ||| |||||||||||||  | |||||||||| ||||||||||||||    
T  35037007 aaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcac 35037088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 1771367 - 1771283
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| |||||| || ||||  ||||| ||||||||||| |  || ||||||||||||| ||||||||||    
T  1771367 aggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcac 1771283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 27864563 - 27864647
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||| |||| | |||| |||||||| ||||| ||||||||||| |  |||||||||||| ||| ||||||||||    
T  27864563 aggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcac 27864647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 55966447 - 55966363
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||| |||| |||||| |||||||| ||||| |||| |||||| |  |||||||||||| ||| ||||||||||    
T  55966447 aggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcac 55966363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 533
Target Start/End: Complemental strand, 3756344 - 3756263
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||| ||||||||||||||  | ||| |||||||||||||  | |||||||||  |||||| |||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctcac 3756263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 533
Target Start/End: Complemental strand, 27893940 - 27893859
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||| |||| | |||| |||||||| ||||| ||||||||||| |  |||||||||||| ||| ||||||||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcac 27893859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 533
Target Start/End: Complemental strand, 48463552 - 48463467
Alignment:
Q  448 taggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||| |||| | |||| ||||||||| |||| |||| |||||| |  |||||||||||| ||| ||||||||||    
T  48463552 taggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcac 48463467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 449 - 504
Target Start/End: Complemental strand, 46827807 - 46827752
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgca 504  Q
    |||||||||||||||||||| |||||||||||||| || ||| ||||||| |||||    
T  46827807 aggaaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgca 46827752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 533
Target Start/End: Original strand, 41878407 - 41878489
Alignment:
Q  451 gaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||  ||||| |||||||   |||| ||||||| || ||  |||||||||||||||| ||||||||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcac 41878489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 533
Target Start/End: Complemental strand, 48435682 - 48435596
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||| ||||||||||||| | |||||||| |||  | ||| |||||||||||||  ||||| || ||| ||||||||||||||    
T  48435682 ataggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcac 48435596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 530
Target Start/End: Complemental strand, 49229766 - 49229684
Alignment:
Q  448 taggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatct 530  Q
    ||||||||||||| ||||||||||||||||||||||  | ||| |||||  ||||||  | ||||||| || |||||||||||    
T  49229766 taggaaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 533
Target Start/End: Original strand, 43735744 - 43735825
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||| |||||||||||||||||| || |||||  |||||||||  ||||| |  || ||||||||||||| ||||||||||    
T  43735744 aaaatattacatgaacatcctttattcctacatctcattatacattccatgtattagagatattttgataagttcatctcac 43735825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 530
Target Start/End: Original strand, 27550309 - 27550389
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatct 530  Q
    ||||||||||||||||||| |||||| |  |||| |||||| |||||| |||| |  |||||||||||| ||| |||||||    
T  27550309 ggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatct 27550389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 33703140 - 33703224
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| |||||| |  |||||   ||| ||||||||||| |  |||||||||||| ||| ||||||||||    
T  33703140 aggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcac 33703224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 35017733 - 35017815
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| |||||| || || ||  |||| ||||||||||| |  |||||||||||| ||| ||||||||||    
T  35017733 ggaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgta-tagggatattttggtaagttcatctcac 35017815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 533
Target Start/End: Original strand, 31680904 - 31680985
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||| | |||| | |||| |||||||||||||| |||||||| |  |  |||||||||||| ||| ||||||||||    
T  31680904 aaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctcac 31680985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 533
Target Start/End: Complemental strand, 43514784 - 43514703
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||| |||||| || |||| |||||| |||||  |||| |  |||| ||||||| ||| ||||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcac 43514703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 530
Target Start/End: Original strand, 12496956 - 12497036
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatct 530  Q
    ||||||||||| ||||||| |||||| || |||| |||||| |||| |||||| |  || ||||||||| ||| |||||||    
T  12496956 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 12497036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 25051692 - 25051776
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||| |||||||||  ||||| || ||||  ||||| ||||||| ||| |  |||||||||||| ||| ||||||||||    
T  25051692 aggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctcac 25051776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 448 - 558
Target Start/End: Original strand, 45705823 - 45705931
Alignment:
Q  448 taggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttc 547  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||| ||||| |||||||  | ||| ||||||||||||||||||||  | |||| ||||||    
T  45705823 taggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctca--caaccatactttc 45705920  T
Q  548 tctttcatctc 558  Q
    |||||||||||    
T  45705921 tctttcatctc 45705931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 450 - 558
Target Start/End: Original strand, 48119628 - 48119734
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    ||||||||||||||||||| ||||||||||||||  | ||| |||||||||||||  | |||||||||| |||||||||||||  | |||| ||||||||    
T  48119628 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctca--caaccatactttctc 48119725  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  48119726 tttcatctc 48119734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 449 - 558
Target Start/End: Original strand, 44112676 - 44112783
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    |||||||||||||||||||| ||||||||||||||  | ||| |||||||||||||  ||||| |||||| ||| |||||||||  | |||| |||||||    
T  44112676 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca--caaccatactttct 44112773  T
Q  549 ctttcatctc 558  Q
    ||||||||||    
T  44112774 ctttcatctc 44112783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 450 - 558
Target Start/End: Original strand, 35003294 - 35003400
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    ||||||||||||||||||| ||||||||||||||  | ||| |||||||||| ||  | |||||||||| |||||||||||||  | |||| ||||||||    
T  35003294 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctca--caaccatactttctc 35003391  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  35003392 tttcatctc 35003400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 450 - 558
Target Start/End: Original strand, 46168383 - 46168489
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    ||||||||||||||||||| |||||||||||| || | ||| ||||||| |||||  | |||||||||| |||||||||||||  | |||| ||||||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctca--caaccatactttctc 46168480  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  46168481 tttcatctc 46168489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 449 - 558
Target Start/End: Complemental strand, 45639833 - 45639726
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    ||||||||||||||||||||  |||||||||||||| | ||| |||||||||| ||  | |||||||||| |||||||||||||  | | || |||||||    
T  45639833 aggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctca--caatcatactttct 45639736  T
Q  549 ctttcatctc 558  Q
    ||||||||||    
T  45639735 ctttcatctc 45639726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 558
Target Start/End: Original strand, 38335918 - 38336024
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    ||||||||||||||||||| ||||||||||||||    ||| |||| ||||||||  | |||||||||| |||||||||||||  | |||| ||||||||    
T  38335918 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctca--caaccatactttctc 38336015  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  38336016 tttcatctc 38336024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 447 - 532
Target Start/End: Complemental strand, 750408 - 750323
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctca 532  Q
    ||||||||||||||| |||||| ||||   || ||||  ||||| ||||||||||| | |||||||||||||||||||||||||||    
T  750408 ataggaaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttgataaattcatctca 750323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 5489775 - 5489859
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| |||||| || ||||| ||||| ||||||| ||| |  |||||||||||| ||| ||||||||||    
T  5489775 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 5489859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 447 - 558
Target Start/End: Complemental strand, 45427848 - 45427739
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacacttt 546  Q
    |||||||||||||||||||| | | ||||||||||||  | ||| ||||| |||||||  ||||| |||||| ||| |||||||||  | |||| |||||    
T  45427848 ataggaaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctca--caaccatacttt 45427751  T
Q  547 ctctttcatctc 558  Q
    ||||||||||||    
T  45427750 ctctttcatctc 45427739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 558
Target Start/End: Complemental strand, 38113297 - 38113189
Alignment:
Q  448 taggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttc 547  Q
    ||||||||||||| ||||||| ||||||||||||||  | ||| |||||||||||||  |  || |||||| |||||||||||||  | |||| |||| |    
T  38113297 taggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctca--caaccatacttac 38113200  T
Q  548 tctttcatctc 558  Q
    |||||||||||    
T  38113199 tctttcatctc 38113189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 558
Target Start/End: Original strand, 41065151 - 41065259
Alignment:
Q  448 taggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttc 547  Q
    ||||||||||||||||||||| ||||||||||||||  |  || |||||||||||||  ||||  |||||| ||| |||||||||  | |||| ||||||    
T  41065151 taggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctca--caaccatactttc 41065248  T
Q  548 tctttcatctc 558  Q
    |||||| ||||    
T  41065249 tctttcctctc 41065259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 449 - 531
Target Start/End: Original strand, 26585461 - 26585543
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctc 531  Q
    |||||||||||| |||||||| ||||||||||||| |  ||| |||||||||||||  | |||||||||  ||||||||||||    
T  26585461 aggaaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctc 26585543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 558
Target Start/End: Complemental strand, 35000213 - 35000107
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    ||||||||||||||||||| | |||||||||||| || ||| || ||  |||| |  ||||| ||||||||||||| ||||||  | |||| ||||||||    
T  35000213 ggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctca--caaccatactttctc 35000116  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  35000115 tttcatctc 35000107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 37814778 - 37814861
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||| |||| |||||| ||||||||  |||| ||||||||||| |  | |||||||||| ||||||||| ||||    
T  37814778 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcac 37814861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 43571186 - 43571103
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| |||||| || ||||   |||| ||||||||||| |  |||||||||||| ||| ||||||||||    
T  43571186 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcac 43571103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 533
Target Start/End: Complemental strand, 2497660 - 2497579
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||| |||| | |||| |||||||||||||| ||||||||||  |  | |||||||||| ||| ||||||||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcac 2497579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 533
Target Start/End: Original strand, 7447828 - 7447908
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||||||| || ||||| ||||| ||||||| ||| |  |  ||||||||||||| ||||||||||    
T  7447828 aaaatgttacatgaacatcctttattcctacatcccattgtacaccc-atgtattacagatattttgataagttcatctcac 7447908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 48499063 - 48498979
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||||  ||||| |  |||| |||||| |||||| |||| |  |||||||||||| ||| ||||||||||    
T  48499063 aggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcac 48498979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 504
Target Start/End: Original strand, 14427346 - 14427401
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgca 504  Q
    |||||||||||||||||||| ||||||||||||||  | ||| |||||| ||||||    
T  14427346 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgca 14427401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 23989625 - 23989540
Alignment:
Q  449 aggaaaatgttacatgaacatcc-tttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| || |||| ||||||| || ||| || |||| ||| |  |||||||||||| |||||| |||||||    
T  23989625 aggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctcac 23989540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 449 - 558
Target Start/End: Original strand, 34304787 - 34304894
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    |||||||||||||||||||||||||||||||||||  | ||| |||||||||||||  ||||| |||||| ||| |||||||||  | |||| |||||||    
T  34304787 aggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca--caaccatactttct 34304884  T
Q  549 ctttcatctc 558  Q
    ||||||||||    
T  34304885 ctttcatctc 34304894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 448 - 558
Target Start/End: Complemental strand, 18066820 - 18066712
Alignment:
Q  448 taggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttc 547  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| |||| |||||| |  |||||||||||  ||| |||||||||  | |||| ||||||    
T  18066820 taggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctca--caaccatactttc 18066723  T
Q  548 tctttcatctc 558  Q
    |||||||||||    
T  18066722 tctttcatctc 18066712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 449 - 558
Target Start/End: Original strand, 35181515 - 35181622
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    |||||||||||||||||||| ||||||||||||||  | ||| |||||||||||||  ||||| |||||| ||| |||||||||  | |||| |||||||    
T  35181515 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca--caaccatactttct 35181612  T
Q  549 ctttcatctc 558  Q
    ||||||||||    
T  35181613 ctttcatctc 35181622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 452 - 533
Target Start/End: Original strand, 26125637 - 26125718
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||| |||| |||||| |||||||||||||| ||||||| ||| |  |||||||||||| ||| ||||||||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 26125718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 447 - 558
Target Start/End: Complemental strand, 16603729 - 16603620
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacacttt 546  Q
    |||||||||||||||||| ||| ||||||||||||||    |||||||||||||||||  |  || |||||| |||||||||||||  | |||| ||||     
T  16603729 ataggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctca--caaccatactta 16603632  T
Q  547 ctctttcatctc 558  Q
    ||||||||||||    
T  16603631 ctctttcatctc 16603620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 36743584 - 36743500
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| |||||| || ||||| ||||| ||||||| ||| |  |||||||||||| ||| ||||||||||    
T  36743584 aggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 36743500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 11582766 - 11582849
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| |||||| || ||||| ||||| ||||||| ||| |  |||||||||||| ||| ||||||||||    
T  11582766 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 11582849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 29705362 - 29705445
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| |||||| |  ||||  ||||| ||||||||||| |  |||||||||||||||| ||||||||||    
T  29705362 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcac 29705445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 447 - 533
Target Start/End: Complemental strand, 29801053 - 29800967
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||| |||||||||||| |||| | |||| |||||||| ||||| ||||||||||| |  |||||||||||| ||| ||||||||||    
T  29801053 atagaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcac 29800967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 533
Target Start/End: Original strand, 20148757 - 20148843
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||| |||||||||||| |||| |||||| |||||||| ||||| |||||| |||  |  |||||||||||| ||| ||||||||||    
T  20148757 atagaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcac 20148843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 533
Target Start/End: Original strand, 31384661 - 31384747
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||| | ||||||||||| |||||| || ||||||| ||| ||||||||||| |  ||| |||||||| ||| ||||||||||    
T  31384661 ataggaaagtattacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcac 31384747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 451 - 558
Target Start/End: Complemental strand, 16358933 - 16358827
Alignment:
Q  451 gaaaatgttacat-gaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    ||||||||||||| ||| | ||||||||||||||  | ||| |||| ||||||||  | | ||||||||||||||||||||||  | |||| |||||||     
T  16358933 gaaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctca--caaccatactttctt 16358836  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  16358835 tttcatctc 16358827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 530
Target Start/End: Complemental strand, 30660843 - 30660762
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatct 530  Q
    |||||||||||||||||||| |||||| |  ||||| ||||| ||||||| ||| |  |||||||||||| ||| |||||||    
T  30660843 aggaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatct 30660762  T

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Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 5754902 - 5754986
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| | |||| || ||||| ||||| |||| |||||  |  |||||||||||| ||| ||||||||||    
T  5754902 aggaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcac 5754986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 558
Target Start/End: Complemental strand, 33630091 - 33629987
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctctt 551  Q
    ||||||||||| ||||| ||||||||||||||   |||| ||||||| |||||  ||||| |||||  ||| |||||||||  | || | ||||||||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctca--caactatactttctctt 33629994  T
Q  552 tcatctc 558  Q
    |||||||    
T  33629993 tcatctc 33629987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 533
Target Start/End: Original strand, 2546993 - 2547079
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||||||  ||||| |  |||| |||||| |||||| |||| |  |||||||||||  ||| ||||||||||    
T  2546993 ataggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcac 2547079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 449 - 483
Target Start/End: Complemental strand, 19386671 - 19386637
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcataca 483  Q
    |||||||||||||||||||| ||||||||||||||    
T  19386671 aggaaaatgttacatgaacaccctttaatcataca 19386637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 533
Target Start/End: Original strand, 42295197 - 42295278
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||| |||||| || ||||   |||| ||||| ||||| |  |||||||||||| ||| ||||||||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcac 42295278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 449 - 558
Target Start/End: Original strand, 9434123 - 9434230
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    |||||||||||||||||||| |||||||||||||| || ||| |||||||||||||  ||||| |||||| ||| |||||||||  | |||| |||||||    
T  9434123 aggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctca--caaccatactttct 9434220  T
Q  549 ctttcatctc 558  Q
    ||||||||||    
T  9434221 ctttcatctc 9434230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 449 - 558
Target Start/End: Complemental strand, 10457993 - 10457886
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    |||||||||||||||||||| | ||||||||||||  | ||| |||||||||||||  | |||||||||| |||||| ||||||  | |||| |||||||    
T  10457993 aggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctca--caaccatactttct 10457896  T
Q  549 ctttcatctc 558  Q
    ||||||||||    
T  10457895 ctttcatctc 10457886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 36150130 - 36150213
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||| | |||||| |||||||  ||||||||||||| ||| | ||||||||||||| ||| ||||||||||    
T  36150130 ggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcac 36150213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 45127028 - 45126945
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||| |||| |||||| |||||||| ||||| ||||||||||| |  |||||||||||| ||| ||||||||||    
T  45127028 ggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcac 45126945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 449 - 558
Target Start/End: Complemental strand, 4190366 - 4190259
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    |||||||||||||||||||| ||||||||||||||  | ||| ||||||  ||| |  || ||||||||| |||||||||||||  | |||| |||||||    
T  4190366 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctca--caaccatactttct 4190269  T
Q  549 ctttcatctc 558  Q
    ||||||||||    
T  4190268 ctttcatctc 4190259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 533
Target Start/End: Complemental strand, 42394518 - 42394436
Alignment:
Q  451 gaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||| |||||| || ||||||||||| ||||||| ||| |  |||||||||||| ||| ||||||||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 42394436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 449 - 557
Target Start/End: Complemental strand, 52628078 - 52627972
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    ||||||||||||| |||||| ||||||||||||||| | ||| |||||| ||||||  | | |||||||| |||||||||||||  | | || |||||||    
T  52628078 aggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctca--caatcatactttct 52627981  T
Q  549 ctttcatct 557  Q
    |||||||||    
T  52627980 ctttcatct 52627972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 46941052 - 46941136
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| |||||| || |||||  |||| ||||||||||| |  |||||||||||| ||| ||||||||||    
T  46941052 aggaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcac 46941136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 558
Target Start/End: Original strand, 25996266 - 25996374
Alignment:
Q  448 taggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttc 547  Q
    ||||||||||||||||||||| |||||||||||||||   ||| ||||||||||  |  | ||| |||||| |||||||||||||  | |||| | ||||    
T  25996266 taggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctca--caaccatattttc 25996363  T
Q  548 tctttcatctc 558  Q
    |||||||||||    
T  25996364 tctttcatctc 25996374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 447 - 533
Target Start/End: Complemental strand, 53581961 - 53581875
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||| |||||||||||||||||  ||||| ||||||| |||||| |||| || ||| |  |||||||||||||||| ||||||||||    
T  53581961 atagaaaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcac 53581875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 451 - 533
Target Start/End: Original strand, 54237097 - 54237179
Alignment:
Q  451 gaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||| |||||| || ||||| ||||| ||||||| ||| |  |||||||||||| ||| ||||||||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 54237179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 558
Target Start/End: Original strand, 34791829 - 34791935
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    ||||||||||||||||||| ||||||||||||||    ||| || ||| ||||||  ||||| ||||| |||| |||||||||  | |||| ||||||||    
T  34791829 ggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctca--caaccatactttctc 34791926  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  34791927 tttcatctc 34791935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 24688503 - 24688419
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| |||||| |  |||| |||||| ||||||| ||| |  |||||||||||| ||| ||||||||||    
T  24688503 aggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcac 24688419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 42100688 - 42100771
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| |||||| || ||||   |||| ||||||||||| |  |||||||||||| ||| ||||||||||    
T  42100688 ggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcac 42100771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 40808864 - 40808948
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||| |||| | |||| || ||||  ||||| ||||||||||| |  |||||||||||| ||| ||||||||||    
T  40808864 aggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcac 40808948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 533
Target Start/End: Original strand, 25413678 - 25413764
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||||| |||||| || ||||  ||||| ||||||  ||| |  |||||||||||  ||| ||||||||||    
T  25413678 ataggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcac 25413764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 551
Target Start/End: Original strand, 51249344 - 51249407
Alignment:
Q  486 ccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctctt 551  Q
    |||||||||||| ||||||  | |||||||||| |||||||||||||  | |||||||||||||||    
T  51249344 ccattatacacctcatgcattaaggatattttggtaaattcatctca--caaccacactttctctt 51249407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 533
Target Start/End: Original strand, 27748565 - 27748646
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||| | |||| |||||||   |||||||||||  ||| |  |||||||||||| ||| ||||||||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctcac 27748646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 558
Target Start/End: Original strand, 51757593 - 51757699
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    ||||||| |||||| |||| ||||||||||||||  | ||| |||||| ||||||  | ||| |||||  ||| |||||||||  | |||| ||||||||    
T  51757593 ggaaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctca--caaccatactttctc 51757690  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  51757691 tttcatctc 51757699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 47191126 - 47191043
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| |||||| || ||||   |||| |||| |||||| |  || ||||||||||||| ||||||||||    
T  47191126 aggaaaatgttacatgaacaccctttattcctacacctcattgtaca-cccatgtattagagatattttgataagttcatctcac 47191043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 54246249 - 54246165
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| |||||| || ||||  ||||| ||||||| ||| |  || ||||||||  ||| ||||||||||    
T  54246249 aggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcac 54246165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 7617132 - 7617216
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| |||||| ||||||| |||||||||||||||||| |  |||||||||||| ||| ||||||||||    
T  7617132 aggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcac 7617216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 447 - 558
Target Start/End: Original strand, 17208071 - 17208180
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacacttt 546  Q
    ||||||||||||||| |||||| |||||||||||||| |  ||| |||||||||||||  | ||| |||||| |||||||||||||  | |||| |||||    
T  17208071 ataggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctca--caaccatacttt 17208168  T
Q  547 ctctttcatctc 558  Q
    ||||||||||||    
T  17208169 ctctttcatctc 17208180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 558
Target Start/End: Complemental strand, 32473494 - 32473388
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    ||||||||||||||||||| ||||||||||||||    ||| |||||| ||||||  |||||||||||| ||| |||||||||  | |||| ||||||||    
T  32473494 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctca--caaccatactttctc 32473397  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  32473396 tttcatctc 32473388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 38470578 - 38470662
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||| |||| |||||| |||||||||||||| ||||||||||| |  | |||||||||| ||||||||| ||||    
T  38470578 aggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcatttcac 38470662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 449 - 558
Target Start/End: Complemental strand, 30622819 - 30622713
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    |||||||||||||||||||||||||||||||||||  | ||| || | ||||||||  | |||||||||| |||||| ||||||  | |||| |||||||    
T  30622819 aggaaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaaatttatctca--caaccatactttct 30622723  T
Q  549 ctttcatctc 558  Q
    ||||||||||    
T  30622722 ctttcatctc 30622713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 2614749 - 2614666
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| |||||| || ||||| ||||| ||||||| ||| |  |||||||||||| ||| ||||||||||    
T  2614749 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 2614666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 22512305 - 22512388
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| |||||| || |||| |||||| ||||| ||||| |  |||||||||||| ||| ||||||||||    
T  22512305 ggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcac 22512388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 41334763 - 41334680
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| |||||| |||||||   |||||||||||| ||| |  |||||||||||| ||| ||||||||||    
T  41334763 ggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcac 41334680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 533
Target Start/End: Original strand, 5256997 - 5257078
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||| |||| | |||| |||||||| ||||| ||||||||||| |  |||||||||||| ||| ||||||||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcac 5257078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 18033981 - 18034065
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| |||||| || |||| |||||| ||||||| ||| |  |||||||||||  ||| ||||||||||    
T  18033981 aggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcac 18034065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 33801468 - 33801552
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||||||||||| |  ||||  ||||| ||||| ||||| |  |||||||||||  ||| ||||||||||    
T  33801468 aggaaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctcac 33801552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 33855143 - 33855091
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatg 502  Q
    ||||||||||||||||||| |||||| || ||||  ||||| |||||||||||    
T  33855143 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatg 33855091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 449 - 559
Target Start/End: Original strand, 16803967 - 16804075
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    |||||||||||||||||||| ||||||||||||||  | ||| |||| ||||||||  ||||| |||||||||| |||||||||  | |||| |||||||    
T  16803967 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctca--caaccatactttct 16804064  T
Q  549 ctttcatctct 559  Q
    |||||||||||    
T  16804065 ctttcatctct 16804075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 449 - 559
Target Start/End: Original strand, 16843249 - 16843357
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    |||||||||||||||||||| ||||||||||||||  | ||| |||| ||||||||  ||||| |||||||||| |||||||||  | |||| |||||||    
T  16843249 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctca--caaccatactttct 16843346  T
Q  549 ctttcatctct 559  Q
    |||||||||||    
T  16843347 ctttcatctct 16843357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 452 - 558
Target Start/End: Complemental strand, 41282072 - 41281968
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctctt 551  Q
    ||||||||||||||||| ||||||||||||||  | ||| |||||||||||||  ||||| |||||||||| |||||||||  | |||| ||||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctca--caaccatactttctctt 41281975  T
Q  552 tcatctc 558  Q
    |||||||    
T  41281974 tcatctc 41281968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 449 - 558
Target Start/End: Original strand, 43114556 - 43114663
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    |||||||||||||||||||| ||||||||||||||  | ||| |||||||||||||  ||||| |||||| ||| |||||||||  | |||| |||||||    
T  43114556 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca--caaccatactttct 43114653  T
Q  549 ctttcatctc 558  Q
    ||||||||||    
T  43114654 ctttcatctc 43114663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 452 - 558
Target Start/End: Complemental strand, 11825752 - 11825648
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctctt 551  Q
    ||||||||||||||||| ||||||||||||||  | ||| |||||||||||||  ||||| |||||| ||| |||||||||  | | || ||||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctca--caatcatactttctctt 11825655  T
Q  552 tcatctc 558  Q
    |||||||    
T  11825654 tcatctc 11825648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 447 - 533
Target Start/End: Complemental strand, 8896686 - 8896600
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||| ||||||||||||||||| |||||| ||| |||||||||| ||||||| || ||  ||| |||||||| ||||||||||||||    
T  8896686 atagaaaaatgttacatgaacaccctttattcacacattccattgtacaccctatacaataggaatattttggtaaattcatctcac 8896600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 533
Target Start/End: Original strand, 19047158 - 19047240
Alignment:
Q  451 gaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||| |||||| || ||||||||||| ||||||| ||| |  |||||||||||| ||| ||||||||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 19047240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 452 - 533
Target Start/End: Complemental strand, 6518566 - 6518486
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||| |||||||||||||| || ||| |||||||||||||  ||||| |||||| ||| ||||||||||    
T  6518566 aaaatgttacatgaaca-cctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcac 6518486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 558
Target Start/End: Complemental strand, 12415560 - 12415454
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    ||||||||||||||||||| ||||||||||||||    ||| |||||||||||||  ||||| |||||| ||| || ||||||  | |||| ||||||||    
T  12415560 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctca--caaccatactttctc 12415463  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  12415462 tttcatctc 12415454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 450 - 558
Target Start/End: Complemental strand, 12427620 - 12427514
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    ||||||||||||||||||| ||||||||||||||    ||| |||||||||||||  ||||| |||||| ||| || ||||||  | |||| ||||||||    
T  12427620 ggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctca--caaccatactttctc 12427523  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  12427522 tttcatctc 12427514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 447 - 558
Target Start/End: Original strand, 18491702 - 18491811
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacacttt 546  Q
    |||||||||||||||||||||| ||||||||||||||  | ||| |||||| ||||||  | | | |||||| |||||||||||||  | |||| ||||     
T  18491702 ataggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctca--caaccatactta 18491799  T
Q  547 ctctttcatctc 558  Q
    ||||||||||||    
T  18491800 ctctttcatctc 18491811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 449 - 558
Target Start/End: Complemental strand, 966935 - 966828
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    |||||||||||||||||||| ||||||||||||||  | ||| |||||||||||||  | | |  ||||| |||||||||||||  | | || |||||||    
T  966935 aggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctca--caaacatactttct 966838  T
Q  549 ctttcatctc 558  Q
    ||||||||||    
T  966837 ctttcatctc 966828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 451 - 551
Target Start/End: Complemental strand, 34817875 - 34817777
Alignment:
Q  451 gaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctct 550  Q
    |||||||||||||||||| |||||| ||| |||   |||| |||||||||||||| | | | |||||| |||||||||||||  | ||||||||||||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctca--caaccacactttctct 34817778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 447 - 533
Target Start/End: Original strand, 42026764 - 42026852
Alignment:
Q  447 ataggaaaatgttacatgaacatcc--tttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||||| ||  |||| |||||||||||||| |||| |||  |||  ||||||||||||  |||||||||||||    
T  42026764 ataggaaaatgttacatgaacacccaatttattcatacattccattgtacatcccgcgcattagggatattttggcaaattcatctcac 42026852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 518
Target Start/End: Original strand, 16096747 - 16096815
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttg 518  Q
    ||||||||||||||||||| |||||| || ||||  ||||||||||||||||| |  ||||||||||||    
T  16096747 ggaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttg 16096815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 551
Target Start/End: Complemental strand, 13780835 - 13780736
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    |||||||||||||| ||||   |||| ||| |||   |||| |||||||||| ||  ||||||||||||||||||||||||||  | |||||||||||||    
T  13780835 ggaaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttgataaattcatctca--caaccacactttctc 13780738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 558
Target Start/End: Complemental strand, 4452034 - 4451944
Alignment:
Q  466 acatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctctttcatctc 558  Q
    ||||||| |||||||||||   ||| ||||||  |||||  |||||||||||| |||||||||||||  | |||| |||||||||||||||||    
T  4452034 acatcctataatcatacatcttattgtacaccatatgcattagggatattttggtaaattcatctca--caaccatactttctctttcatctc 4451944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 448 - 533
Target Start/End: Original strand, 30838630 - 30838715
Alignment:
Q  448 taggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||||| |||||| |  |||||   ||| ||||||||||| |  |||||||||||| ||| ||||||||||    
T  30838630 taggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcac 30838715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 447 - 532
Target Start/End: Complemental strand, 43490504 - 43490419
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctca 532  Q
    |||| ||||||||||||||||| |||||| || ||||| ||||| ||||| | ||| |  |||||||||||| ||| |||||||||    
T  43490504 atagaaaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctca 43490419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 34895842 - 34895758
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||| ||||||||||||| | |||||||| |||  | ||| |||||||||||||  ||||| || ||| ||||||||||||||    
T  34895842 aggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcac 34895758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 1750414 - 1750497
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| |||||| || ||||  ||||| ||||||| ||| |  |||||||||||  ||| ||||||||||    
T  1750414 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcac 1750497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 533
Target Start/End: Complemental strand, 4299518 - 4299437
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||| ||||||| ||||||||||||||  | ||| ||||| |||||||  |  || |||||| ||||||||||||||    
T  4299518 aaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctcac 4299437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 12302354 - 12302270
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| |||||| |  ||||  ||||| ||||||| ||| |  |||||||||||  ||| ||||||||||    
T  12302354 aggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcac 12302270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 533
Target Start/End: Complemental strand, 43335864 - 43335780
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||| ||||||||| |||| || ||||   |||| |||| |||||| |  |||||||||||| ||| ||||||||||    
T  43335864 aggaaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctcac 43335780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 449 - 558
Target Start/End: Original strand, 40236918 - 40237025
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttct 548  Q
    |||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||  ||||| |||||| ||| |||||||||  | |||| | |||||    
T  40236918 aggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctca--caaccatattttct 40237015  T
Q  549 ctttcatctc 558  Q
    ||||||||||    
T  40237016 ctttcatctc 40237025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 451 - 558
Target Start/End: Complemental strand, 31408732 - 31408627
Alignment:
Q  451 gaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctct 550  Q
    |||||||||||||||||| |||||||||||||| || ||| |||| ||||||||  | |||||||||| ||||||||| |||  | |||| |||||||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttca--caaccatactttctct 31408635  T
Q  551 ttcatctc 558  Q
    ||||||||    
T  31408634 ttcatctc 31408627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 450 - 558
Target Start/End: Original strand, 31513287 - 31513393
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    |||||||||||||||||||  |||||||||||||  | ||| || ||||||||||  | |||||||||| |||||||||||||  | |||| ||||||||    
T  31513287 ggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctca--caaccatactttctc 31513384  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  31513385 tttcatctc 31513393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 24001112 - 24001029
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| |||||| || ||||| ||||| ||||||| ||| |  |||||||||||| ||| ||||||||||    
T  24001112 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 24001029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 449 - 558
Target Start/End: Original strand, 33384869 - 33384977
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattcc-attatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttc 547  Q
    |||||||||||||||||||||| ||||||||||||  || ||| || || |||||||  ||||| |||||| |||||||||||||  | | || ||||||    
T  33384869 aggaaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctca--caaacatactttc 33384966  T
Q  548 tctttcatctc 558  Q
    |||||||||||    
T  33384967 tctttcatctc 33384977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 42538531 - 42538448
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| |||||| || ||||| ||||| ||||||| ||| |  |||||||||||| ||| ||||||||||    
T  42538531 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcac 42538448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 533
Target Start/End: Original strand, 42972852 - 42972935
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||| ||||||||||||| || |||| |||||| |||||| |||| |  |||||||||||| ||| ||||||||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcac 42972935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 447 - 533
Target Start/End: Complemental strand, 24280699 - 24280613
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||| |||||| |||||| |||||||  | ||| |||| ||||||||| ||  |||||||| ||||||||||||||    
T  24280699 ataggaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctcac 24280613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 447 - 533
Target Start/End: Original strand, 43317440 - 43317526
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||||| | |||| |||||||   |||| |||| || ||||   |||||||||||||||||||||||||||    
T  43317440 ataggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcac 43317526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 533
Target Start/End: Original strand, 10573751 - 10573832
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||| |||| |||||| |||||||| | ||| ||||||||||| |  ||| |||||||| ||||||||||||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcac 10573832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 533
Target Start/End: Original strand, 44326175 - 44326261
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||| |||||||||||| |||| |||||| |||||||| ||||| |||||| |||  |  |||||||||||| ||| ||||||||||    
T  44326175 atagaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcac 44326261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 448 - 533
Target Start/End: Complemental strand, 5194333 - 5194248
Alignment:
Q  448 taggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||||| | |||| |||||||   |||| ||||||| |||    | |||||||||||||||||||||||||    
T  5194333 taggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctcac 5194248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 502
Target Start/End: Complemental strand, 27535332 - 27535279
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatg 502  Q
    |||||||||||||||||||| |||||||||||||| || ||| ||||| |||||    
T  27535332 aggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatg 27535279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 533
Target Start/End: Complemental strand, 43343722 - 43343641
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| |||| |  ||||  | ||| ||||||||||| |  |||||||||||||||| ||||||||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcac 43343641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 533
Target Start/End: Complemental strand, 44417032 - 44416951
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||| |||| |  ||||  | ||| ||||||||||| |  |||||||||||||||| ||||||||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcac 44416951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 5015394 - 5015478
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||||||  ||||| |  |||| |||||| |||||| |||| |  |||||||||||| ||| ||||||||||    
T  5015394 aggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcac 5015478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 533
Target Start/End: Complemental strand, 5811024 - 5810941
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||| || |||||| || ||||  ||||| ||||||| ||  |  |||||||||||||||| ||||||||||    
T  5811024 ggaaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataagttcatctcac 5810941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 517
Target Start/End: Original strand, 39998408 - 39998475
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatatttt 517  Q
    |||||||||||||||||||   ||||||||||||| | ||| ||||||||||| |  |||||||||||    
T  39998408 ggaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggatatttt 39998475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 447 - 533
Target Start/End: Original strand, 9216299 - 9216384
Alignment:
Q  447 ataggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||||| |||||| || || || | ||| |||| ||||||||  || ||||||||| ||| ||||||||||    
T  9216299 ataggaaaatgttacatgaacaccctttattcctatatcctattgtaca-cccatgcattagagatattttggtaagttcatctcac 9216384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 533
Target Start/End: Complemental strand, 4638297 - 4638216
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    ||||||||||||||||| | |||| ||||||| || ||| ||||||||||  |  | |||||||||| ||| ||||||||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcac 4638216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 533
Target Start/End: Original strand, 35069719 - 35069804
Alignment:
Q  448 taggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||||  ||||| || ||||   |||| |||||| |||| |  |||||||||||| ||| ||||||||||    
T  35069719 taggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 35069804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 498
Target Start/End: Original strand, 41861673 - 41861722
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccc 498  Q
    |||||||||||||||||||| |||||| |||||||  | |||||||||||    
T  41861673 aggaaaatgttacatgaacaccctttattcatacacccaattatacaccc 41861722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 533
Target Start/End: Original strand, 112656 - 112738
Alignment:
Q  451 gaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||| |||||| || ||||||||||| ||||||| ||| |  |||||||||||| ||| ||||||||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcac 112738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 558
Target Start/End: Complemental strand, 45817 - 45713
Alignment:
Q  452 aaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctctt 551  Q
    ||||||||||||||||| ||||||||||||||  | ||| |||| || ||| |  | |||||||||| |||||||||||||  | |||| ||||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctca--caaccatactttctctt 45720  T
Q  552 tcatctc 558  Q
    |||||||    
T  45719 tcatctc 45713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 558
Target Start/End: Complemental strand, 35556 - 35450
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcactcgaccacactttctc 549  Q
    |||||||||||||| |||| | ||||||||||||    ||| |||||||||||||  ||||| || ||| |||||||||||||  | |||| ||||||||    
T  35556 ggaaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctca--caaccatactttctc 35459  T
Q  550 tttcatctc 558  Q
    |||||||||    
T  35458 tttcatctc 35450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 11250 - 11334
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||| |||||||||  ||||| |||||||  ||||| ||||||||||  |  |||||||||||| ||| ||||||||||    
T  11250 aggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcac 11334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 533
Target Start/End: Original strand, 684 - 768
Alignment:
Q  449 aggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatctcac 533  Q
    |||||||||||||||||||| |||||| || ||||   |||| |||||| |||| |  |||||||||||| ||| ||||||||||    
T  684 aggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcac 768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 530
Target Start/End: Complemental strand, 23521 - 23441
Alignment:
Q  450 ggaaaatgttacatgaacatcctttaatcatacattccattatacaccccatgcaccagggatattttgataaattcatct 530  Q
    ||||||||||| ||||||| |||||| || |||| |||||| |||| |||||| |  || ||||||||| ||| |||||||    
T  23521 ggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 23441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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