View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5838_low_2 (Length: 251)

Name: NF5838_low_2
Description: NF5838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5838_low_2
NF5838_low_2
[»] chr4 (5 HSPs)
chr4 (3-242)||(21800968-21801207)
chr4 (1-233)||(45892962-45893190)
chr4 (1-199)||(48665469-48665663)
chr4 (84-233)||(12583525-12583673)
chr4 (9-189)||(49421029-49421208)
[»] chr7 (9 HSPs)
chr7 (1-233)||(23773060-23773288)
chr7 (62-233)||(26469940-26470112)
chr7 (62-233)||(26546380-26546552)
chr7 (11-216)||(11275814-11276006)
chr7 (7-117)||(22859647-22859752)
chr7 (5-67)||(26469812-26469869)
chr7 (5-67)||(26546284-26546341)
chr7 (39-112)||(12119548-12119621)
chr7 (9-70)||(33435765-33435822)
[»] scaffold0219 (1 HSPs)
scaffold0219 (1-229)||(6216-6440)
[»] chr3 (1 HSPs)
chr3 (5-233)||(6000194-6000418)
[»] chr2 (3 HSPs)
chr2 (1-233)||(36658044-36658272)
chr2 (41-95)||(20361543-20361597)
chr2 (41-102)||(20429347-20429409)
[»] scaffold0527 (2 HSPs)
scaffold0527 (1-237)||(3599-3826)
scaffold0527 (61-237)||(11662-11834)
[»] chr6 (1 HSPs)
chr6 (9-230)||(23660945-23661162)
[»] chr8 (2 HSPs)
chr8 (9-225)||(923420-923630)
chr8 (40-83)||(42773176-42773219)
[»] chr1 (2 HSPs)
chr1 (16-200)||(16180807-16180990)
chr1 (1-104)||(9004806-9004906)
[»] chr5 (1 HSPs)
chr5 (40-216)||(32538367-32538546)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 21800968 - 21801207
Alignment:
Q  3 ttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaatatattt 102  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21800968 ttgccacaatgatgataaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgttacgtgtttttatgtataaatgaaaatatattt 21801067  T
Q  103 atgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgcc 202  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21801068 atgggtttcagatcaccgttgattaagcgccgcaacagctgtcctttcaaagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgcc 21801167  T
Q  203 gtcgttgtcttgtagagatctggtgttgacgtgatgatgt 242  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  21801168 gtcgttgtcttgtagagatctggtgttgacgtgattatgt 21801207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 45893190 - 45892962
Alignment:
Q  1 ttttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tata 99  Q
    ||||||| |||||||||||||||||||||||||||||     | |||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||    
T  45893190 ttttgcctcaatgatgacaaatatgtgtcacatgttt-----tcatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatata 45893096  T
Q  100 tttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaac 199  Q
    ||||| |||||||||||  ||||||| ||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  45893095 tttataggtttcagatcgtcgttgatgaagcgccgccacggctgtccttttagagtcttggtgtgtgttgattctattgtggtcgctggtttcgttcaac 45892996  T
Q  200 gccgtcgttgtcttgtagagatctggtgttgacg 233  Q
      ||| |||||||| ||||| | |||||||||||    
T  45892995 atcgttgttgtcttatagagctatggtgttgacg 45892962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 48665469 - 48665663
Alignment:
Q  1 ttttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaata-ta 99  Q
    ||||||| |||||||||||||||||||||||||||||     |||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||    
T  48665469 ttttgccgcaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaaaata 48665563  T
Q  100 tttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaac 199  Q
    ||||||||||| |||||  ||| ||| |||||||||| |  ||||||||||||||||||  ||||||||||||||||||||||  ||||||| |||||||    
T  48665564 tttatgggttttagatcgtcgtcgatgaagcgccgcagcggctgtcctttcagagtctttttgtgtgttgattctattgtggttgctggtttcgttcaac 48665663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 12583673 - 12583525
Alignment:
Q  84 tataaatgaaaa-tatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggt 182  Q
    |||||||||||| |||||||||||||||||||||  ||| ||| ||||||| || | |||||||||||| |||| ||||||||  ||||| |||||| ||    
T  12583673 tataaatgaaaaatatatttatgggtttcagatcgtcgtcgatgaagcgcctcagcgactgtcctttcatagtcatggtgtgt--tgattatattgtcgt 12583576  T
Q  183 cactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 233  Q
    ||||||||| |||||||| ||| |||||||||||||| |||||||||||||    
T  12583575 cactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacg 12583525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 49421208 - 49421029
Alignment:
Q  9 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatggg 107  Q
    ||||||||| ||||| ||||| ||| |||  |||||||||||||||||| |||| ||||||| ||| |||||||| ||||| | |||||||||||||| |    
T  49421208 caatgatgataaatacgtgtctcatattt--tttttatgtttattagtgataaacatatgtctcgtatttttatgcataaaagaaaaatatatttatgag 49421111  T
Q  108 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggt 189  Q
    ||| | |||| ||| | | |||||||||  | |||||||| ||| ||||||| |||  ||||||||| |||| |||||||||    
T  49421110 ttttatatcatcgtcggtgaagcgccgccccgactgtcctctcacagtcttgatgtaagttgattctgttgttgtcactggt 49421029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 23773060 - 23773288
Alignment:
Q  1 ttttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatata 99  Q
    ||||||| |||||||||||||||||||||||| |     ||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  23773060 ttttgccgcaatgatgacaaatatgtgtcacagg-----tttttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatata 23773154  T
Q  100 tttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaac 199  Q
    |||||| ||||||||||  ||| ||| |||||||||| |  || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23773155 tttatgagtttcagatcgtcgtcgatgaagcgccgcagcggctatcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgtttaac 23773254  T
Q  200 gccgtcgttgtcttgtagagatctggtgttgacg 233  Q
      ||||||||| |||||||| | |||||||||||    
T  23773255 atcgtcgttgtattgtagagctatggtgttgacg 23773288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 62 - 233
Target Start/End: Original strand, 26469940 - 26470112
Alignment:
Q  62 atatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttgg 160  Q
    |||||| || ||||||||| |||||||||| |||||||||||||||||||||| ||  ||| ||| |||||||||| |   |||||||| | ||||||||    
T  26469940 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatgaagcgccgcagcggttgtccttttaaagtcttgg 26470039  T
Q  161 tgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 233  Q
    |||||||||||||||| |||||||||||||| |||||||  |||||  ||||||||||| | |||||||||||    
T  26470040 tgtgtgttgattctatcgtggtcactggtttcgttcaacatcgtcgacgtcttgtagagctatggtgttgacg 26470112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 62 - 233
Target Start/End: Original strand, 26546380 - 26546552
Alignment:
Q  62 atatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttgg 160  Q
    |||||| || ||||||||| |||||||||| |||||||||||||||||||||| ||  ||| ||| |||||||||| |   |||||||| | ||||||||    
T  26546380 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatgaagcgccgcagcggttgtccttttaaagtcttgg 26546479  T
Q  161 tgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 233  Q
    |||||||||||||||| |||||||||||||| |||||||  |||||  ||||||||||| | |||||||||||    
T  26546480 tgtgtgttgattctatcgtggtcactggtttcgttcaacatcgtcgacgtcttgtagagctatggtgttgacg 26546552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 11275814 - 11276006
Alignment:
Q  11 atgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatgggtt 109  Q
    ||||||||||||||||||| ||| | |    |||| ||||||||||| ||||||||||||| || |||||||| ||||| ||||| |||||||| || ||    
T  11275814 atgatgacaaatatgtgtctcatatct----tttacgtttattagtgataaatatatgtcatgt-tttttatgcataaaagaaaaatatatttagggatt 11275908  T
Q  110 tcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttg 209  Q
    |||||||  ||         ||| ||  |||||||||| ||| |||||||||||| ||||||| | |||||||||||| |||||| ||||| ||| ||||    
T  11275909 tcagatcttcg---------cgcagccgcaactgtcctctcacagtcttggtgtgagttgattatgttgtggtcactgattttgtacaacgtcgttgttg 11275999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 22859647 - 22859752
Alignment:
Q  7 cacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttt-tatgtataaatgaaaatatatttatg 105  Q
    ||||||||| | |||||||||||||||      ||||||||||||||  || | ||||||||||  ||||||| ||||||||||||||||||||||||||    
T  22859647 cacaatgataataaatatgtgtcacat------tttttatgtttattgatgatgaatatatgtccggtgttttttatgtataaatgaaaatatatttatg 22859740  T
Q  106 ggtttcagatca 117  Q
    ||||||| ||||    
T  22859741 ggtttcatatca 22859752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 26469812 - 26469869
Alignment:
Q  5 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatat 67  Q
    ||||||||||||||||||||||||||||||     ||||||||||||| ||||||||||||||    
T  26469812 gccacaatgatgacaaatatgtgtcacatg-----tttttatgtttatcagtggtaaatatat 26469869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 26546284 - 26546341
Alignment:
Q  5 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatat 67  Q
    ||||||||||||||||||||||||||||||     ||||||||||||| ||||||||||||||    
T  26546284 gccacaatgatgacaaatatgtgtcacatg-----tttttatgtttatcagtggtaaatatat 26546341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 12119548 - 12119621
Alignment:
Q  39 ttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttca 112  Q
    |||||||||||||||| || |||||||||||| | || ||||||| ||||||| ||||||||||||| |||||||    
T  12119548 ttttttatgtttattattgataaatatatgtcccatg-ttttatgcataaatgaaaaatatatttataggtttca 12119621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 33435765 - 33435822
Alignment:
Q  9 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtc 70  Q
    ||||||||||||||||||||| ||    | |||||||| ||| |||||||||||||||||||    
T  33435765 caatgatgacaaatatgtgtccca----tattttttatttttgttagtggtaaatatatgtc 33435822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 6440 - 6216
Alignment:
Q  1 ttttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatata 99  Q
    |||||| ||||||||||||||||||||||||||||||     |||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  6440 ttttgctacaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatata 6346  T
Q  100 tttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaac 199  Q
    |||| ||||||||||||  |||  || | |||| ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  6345 tttacgggtttcagatcgtcgtcaatgacgcgctgcagcggctgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggtttcgttaaac 6246  T
Q  200 gccgtcgttgtcttgtagagatctggtgtt 229  Q
    |  ||||||||||||||||| | |||||||    
T  6245 gtagtcgttgtcttgtagagttatggtgtt 6216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 6000418 - 6000194
Alignment:
Q  5 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatattta 103  Q
    |||||||||||||||||||||||||||||||||     |||||||||| |||||||||||||| || ||||||||| |||||||||||||| ||||||||    
T  6000418 gccacaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatatcccgtgtttttgtgtataaatgaaaaatatattta 6000324  T
Q  104 tgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccg 203  Q
    ||||||| || |   ||| ||| |||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  ||    
T  6000323 tgggttttagtttgtcgtcgatgaagcgccgcagcggctgtccttttagagtcttggtgtgtgttgattctattgtggtcactggtttcgttcaacatcg 6000224  T
Q  204 tcgttgtcttgtagagatctggtgttgacg 233  Q
    |||  ||||||||||| | |||||||||||    
T  6000223 tcgacgtcttgtagagctatggtgttgacg 6000194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 36658044 - 36658272
Alignment:
Q  1 ttttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tata 99  Q
    |||||||||||||||||||||||||||||||||||||     |||||||||| |||| |||||||||||| |||||||||||||||||||||||| ||||    
T  36658044 ttttgccacaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtgataaatatatgtcccgtgtttttatgtataaatgaaaagtata 36658138  T
Q  100 tttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaac 199  Q
    |||||||||||||||||  | | ||| |||||||||| |  ||||||| | ||||||||| | ||||| ||||||||||||||||||||||| |||||||    
T  36658139 tttatgggtttcagatcgtcatcgatgaagcgccgcatcggctgtcctgttagagtcttgctttgtgtggattctattgtggtcactggtttcgttcaac 36658238  T
Q  200 gccgtcgttgtcttgtagagatctggtgttgacg 233  Q
    | |||  ||||||||||||| | || ||||||||    
T  36658239 gtcgttattgtcttgtagagctatgatgttgacg 36658272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 20361597 - 20361543
Alignment:
Q  41 ttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa 95  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||||| ||||||    
T  20361597 ttttatgtttattagttataaatatatgtcttgtgtttttatgtataagtgaaaa 20361543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 20429409 - 20429347
Alignment:
Q  41 ttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaat-gaaaatatattt 102  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||| | | ||||||||||||    
T  20429409 ttttatgtttattagttataaatatatgtcttgtgtttttatgtatcagtggaaaatatattt 20429347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 3826 - 3599
Alignment:
Q  1 ttttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatata 99  Q
    ||||||| |||||||||||||||||||||||||||||     |||||||||| |||||| |||||||||| |||||||||||||||||||| ||||||||    
T  3826 ttttgccgcaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtgaatatatgtcccgtgtttttatgtataaatgaaaaatata 3732  T
Q  100 tttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaac 199  Q
    ||||||||||| |||||  ||| ||| ||||||| || |  ||||||||| |||     ||||||||||||||||||||||||  ||||||| ||||||     
T  3731 tttatgggttttagatcgtcgtcgatgaagcgccacagcggctgtccttttaga-----ggtgtgtgttgattctattgtggttgctggtttcgttcaag 3637  T
Q  200 gccgtcgttgtcttgtagagatctggtgttgacgtgat 237  Q
    | |||||||||||| ||||| | |||| ||||||||||    
T  3636 gtcgtcgttgtcttatagagctatggtattgacgtgat 3599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 11834 - 11662
Alignment:
Q  61 aatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttg 159  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||  ||| ||| ||||||| || |  ||||||||| ||||         
T  11834 aatatatgtcccgtgtttttatgtataaatgaaaaatatatttatgggttttagatcgtcgtcgatgaagcgccacagcggctgtccttttagag----- 11740  T
Q  160 gtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacgtgat 237  Q
    |||||||||||||||||||||||  ||||||| |||||| | |||||||||||| ||||| | |||| ||||||||||    
T  11739 gtgtgtgttgattctattgtggttgctggtttcgttcaaggtcgtcgttgtcttatagagctatggtattgacgtgat 11662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 23660945 - 23661162
Alignment:
Q  9 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatggg 107  Q
    ||||||||| |||||||||||||||||||     |||||||||| |||| ||||||||| ||  | ||||||||||||||||||||| ||||||||||||    
T  23660945 caatgatgagaaatatgtgtcacatgttt-----ttatgtttatcagtgctaaatatatatcctgcgtttttatgtataaatgaaaaatatatttatggg 23661039  T
Q  108 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgt 207  Q
    ||||||| |    |  || |||||||||| |  |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||   ||||||    
T  23661040 tttcagaccgtgatccatgaagcgccgcagcgcctgtcctttcagggtcttggtgtgtgttgattctattgtggtcactggtttcgttcaagttcgtcgt 23661139  T
Q  208 tgtcttgtagagatctggtgttg 230  Q
    |||||||||||| | ||||||||    
T  23661140 tgtcttgtagagctatggtgttg 23661162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 923420 - 923630
Alignment:
Q  9 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaatatatttatgggt 108  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||||| ||||||||||||  ||| |||||||| ||||||||||||||||||||||     
T  923420 caatgatgacaaatatgt-tcacatgttt--tttttatgtttattagtgataaatatatgtccggtgcttttatgtgtaaatgaaaatatatttatgggg 923516  T
Q  109 ttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgtt 208  Q
    | ||||| | ||| ||| || |||  || || |||||| ||||  ||||||| |||| || |||| |||||||||| | ||||  ||||||| |||||||    
T  923517 tccagat-atcgtcgatgaaccgc--caccacctgtcccttcatcgtcttggcgtgtcttaattccattgtggtcattagtttcattcaacgtcgtcgtt 923613  T
Q  209 gtcttgtagagatctgg 225  Q
    ||| ||||||| |||||    
T  923614 gtcatgtagagctctgg 923630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 42773219 - 42773176
Alignment:
Q  40 tttttatgtttattagtggtaaatatatgtcacgtgtttttatg 83  Q
    |||||||||||||||||| |||||||||||| | ||||||||||    
T  42773219 tttttatgtttattagtgataaatatatgtctcatgtttttatg 42773176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 16180990 - 16180807
Alignment:
Q  16 gacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcaga 114  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| | |  ||||||||||||    
T  16180990 gacaaatatgtgtcacatgttt--tttttatgtttattagtgataaatatatgtcccgtgtttttatgtataaatgaaaaatgtgtagatgggtttcaga 16180893  T
Q  115 tcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacg 200  Q
    ||  ||| ||| ||||  ||    |  |||||||||| | | |||||||||||||||||  ||||||||||| |||| ||||||||    
T  16180892 tcgtcgtcgatgaagcatcgtcgtaggtgtcctttcacaattttggtgtgtgttgattccgttgtggtcactagtttcgttcaacg 16180807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 9004806 - 9004906
Alignment:
Q  1 ttttgccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatga-aaatata 99  Q
    ||||||| ||||||||||||||| | ||| ||    | |||||||||| |||||||| |||||||||||||| |||||||||| |||||||| |||||||    
T  9004806 ttttgccgcaatgatgacaaatacgcgtccca----tattttttatgtctattagtgataaatatatgtcacttgtttttatgcataaatgagaaatata 9004901  T
Q  100 tttat 104  Q
    |||||    
T  9004902 tttat 9004906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 216
Target Start/End: Complemental strand, 32538546 - 32538367
Alignment:
Q  40 tttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaa---atatatttatgggtttcagatcaccgttgattaagcgccgca 136  Q
    ||||||||||||||||||   || ||||||| |||||||||||| ||||| ||||   |||| ||| || |||| |||||| ||| | | ||||| |||     
T  32538546 tttttatgtttattagtgaagaacatatgtctcgtgtttttatgcataaaagaaaaatatatttttgtgagttttagatcatcgtcggtgaagcgtcgcc 32538447  T
Q  137 acaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgta 216  Q
     | ||| |||| ||| ||||||||| || ||||||| | || |||||| ||||||  ||||||  |||||||||||||||    
T  32538446 ccgactatcctctcacagtcttggtttgagttgattatgttatggtcattggtttcattcaacatcgtcgttgtcttgta 32538367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University