View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5839-Insertion-1 (Length: 1060)

Name: NF5839-Insertion-1
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5839-Insertion-1
NF5839-Insertion-1
[»] chr4 (31 HSPs)
chr4 (488-825)||(7141403-7141738)
chr4 (314-487)||(46494401-46494574)
chr4 (314-487)||(51066449-51066622)
chr4 (30-287)||(7141724-7141983)
chr4 (311-487)||(36192498-36192673)
chr4 (310-487)||(7173584-7173761)
chr4 (310-487)||(39863777-39863954)
chr4 (341-487)||(8740404-8740550)
chr4 (310-463)||(51713964-51714117)
chr4 (310-481)||(32139126-32139297)
chr4 (310-487)||(50905704-50905881)
chr4 (310-463)||(30970383-30970536)
chr4 (314-479)||(2294719-2294878)
chr4 (310-414)||(29576444-29576548)
chr4 (310-415)||(55231715-55231820)
chr4 (310-449)||(47626992-47627133)
chr4 (310-387)||(22304090-22304167)
chr4 (310-428)||(2570216-2570334)
chr4 (310-405)||(676766-676861)
chr4 (314-419)||(41523421-41523526)
chr4 (313-432)||(51279035-51279154)
chr4 (315-432)||(50399646-50399763)
chr4 (310-410)||(4080551-4080651)
chr4 (340-487)||(22423339-22423479)
chr4 (314-376)||(23084468-23084530)
chr4 (315-379)||(37990599-37990663)
chr4 (314-357)||(51066240-51066283)
chr4 (448-487)||(51066205-51066244)
chr4 (310-408)||(40012548-40012645)
chr4 (319-364)||(28202598-28202643)
chr4 (317-398)||(28202701-28202782)
[»] chr7 (19 HSPs)
chr7 (310-493)||(35109641-35109824)
chr7 (311-487)||(38265237-38265413)
chr7 (310-487)||(21577097-21577274)
chr7 (310-487)||(34721790-34721967)
chr7 (314-487)||(16059356-16059529)
chr7 (310-476)||(41151139-41151306)
chr7 (314-487)||(18116947-18117120)
chr7 (314-488)||(38405157-38405331)
chr7 (310-484)||(45278411-45278585)
chr7 (316-487)||(11216725-11216896)
chr7 (315-449)||(12472115-12472249)
chr7 (310-425)||(37095209-37095324)
chr7 (314-484)||(48176359-48176529)
chr7 (310-430)||(245263-245383)
chr7 (310-442)||(23028684-23028816)
chr7 (310-411)||(28407540-28407637)
chr7 (433-487)||(40038621-40038675)
chr7 (315-405)||(24123021-24123117)
chr7 (310-353)||(39234853-39234896)
[»] chr3 (28 HSPs)
chr3 (309-487)||(8400811-8400989)
chr3 (310-487)||(7417754-7417931)
chr3 (310-488)||(35198720-35198898)
chr3 (310-487)||(22855843-22856020)
chr3 (310-460)||(50823681-50823831)
chr3 (310-460)||(50852029-50852179)
chr3 (314-478)||(55467964-55468129)
chr3 (314-487)||(34824512-34824685)
chr3 (310-487)||(52545277-52545454)
chr3 (314-472)||(43334057-43334215)
chr3 (347-487)||(48077977-48078117)
chr3 (311-414)||(22371729-22371832)
chr3 (310-396)||(37330606-37330692)
chr3 (311-396)||(30534902-30534987)
chr3 (311-428)||(29635883-29636001)
chr3 (317-458)||(50726003-50726144)
chr3 (317-458)||(50786704-50786845)
chr3 (310-414)||(19872482-19872586)
chr3 (310-396)||(37454743-37454829)
chr3 (315-469)||(42876189-42876343)
chr3 (310-383)||(25910665-25910738)
chr3 (310-411)||(25589253-25589347)
chr3 (310-487)||(39438828-39438995)
chr3 (314-400)||(30203657-30203740)
chr3 (310-354)||(773666-773710)
chr3 (380-471)||(5548970-5549061)
chr3 (316-361)||(31297529-31297574)
chr3 (315-383)||(14848552-14848620)
[»] chr8 (22 HSPs)
chr8 (310-487)||(19723267-19723444)
chr8 (310-487)||(11403957-11404134)
chr8 (310-487)||(32296638-32296815)
chr8 (311-487)||(4840096-4840272)
chr8 (310-487)||(22711465-22711642)
chr8 (314-486)||(28739564-28739736)
chr8 (310-462)||(29767169-29767319)
chr8 (310-487)||(11610236-11610413)
chr8 (310-487)||(41553244-41553418)
chr8 (310-487)||(30682795-30682971)
chr8 (314-425)||(17095568-17095679)
chr8 (367-487)||(27881044-27881164)
chr8 (367-487)||(28021225-28021345)
chr8 (344-488)||(24475029-24475173)
chr8 (310-410)||(36261679-36261779)
chr8 (331-414)||(21355004-21355087)
chr8 (310-410)||(43288105-43288205)
chr8 (314-397)||(11909426-11909509)
chr8 (310-371)||(27879559-27879620)
chr8 (310-371)||(28019740-28019801)
chr8 (419-486)||(6097521-6097588)
chr8 (310-431)||(44741919-44742038)
[»] chr6 (9 HSPs)
chr6 (310-487)||(35163749-35163926)
chr6 (311-481)||(19686827-19686997)
chr6 (310-487)||(2711739-2711910)
chr6 (310-422)||(20685346-20685458)
chr6 (310-487)||(14505524-14505698)
chr6 (389-484)||(14496311-14496406)
chr6 (310-417)||(17948706-17948813)
chr6 (314-416)||(15070152-15070254)
chr6 (340-417)||(24336641-24336718)
[»] chr5 (11 HSPs)
chr5 (310-487)||(17064279-17064456)
chr5 (314-487)||(20983006-20983179)
chr5 (310-459)||(37976530-37976683)
chr5 (309-476)||(41910793-41910958)
chr5 (316-410)||(31673863-31673956)
chr5 (391-487)||(35237103-35237199)
chr5 (315-433)||(39162859-39162977)
chr5 (310-426)||(5009416-5009531)
chr5 (311-354)||(35237059-35237102)
chr5 (312-367)||(38255559-38255614)
chr5 (353-410)||(18303352-18303409)
[»] chr1 (18 HSPs)
chr1 (314-487)||(30054445-30054618)
chr1 (312-487)||(30370061-30370236)
chr1 (310-487)||(45323962-45324139)
chr1 (310-487)||(12025137-12025314)
chr1 (310-487)||(20014414-20014591)
chr1 (314-484)||(21090074-21090244)
chr1 (310-463)||(4573359-4573512)
chr1 (311-487)||(33763254-33763430)
chr1 (312-456)||(30850841-30850985)
chr1 (311-417)||(22024129-22024235)
chr1 (310-414)||(14498078-14498182)
chr1 (314-481)||(35617942-35618104)
chr1 (310-418)||(33762539-33762647)
chr1 (397-488)||(15034410-15034501)
chr1 (320-399)||(35371754-35371833)
chr1 (314-431)||(44438553-44438670)
chr1 (311-371)||(17015192-17015252)
chr1 (315-385)||(17291828-17291897)
[»] chr2 (25 HSPs)
chr2 (310-487)||(40155996-40156173)
chr2 (320-487)||(6672802-6672969)
chr2 (308-487)||(44650349-44650528)
chr2 (310-487)||(2754050-2754227)
chr2 (310-487)||(10745231-10745408)
chr2 (310-487)||(17136343-17136520)
chr2 (310-487)||(25987660-25987838)
chr2 (310-487)||(5039376-5039553)
chr2 (310-487)||(36380131-36380308)
chr2 (310-450)||(45136969-45137109)
chr2 (310-487)||(2357075-2357251)
chr2 (310-461)||(36836328-36836479)
chr2 (310-471)||(21637869-21638030)
chr2 (310-487)||(26690110-26690287)
chr2 (310-487)||(7860145-7860322)
chr2 (313-493)||(30372682-30372862)
chr2 (310-478)||(3200847-3201014)
chr2 (311-487)||(13047156-13047324)
chr2 (310-451)||(33066582-33066723)
chr2 (310-417)||(558438-558545)
chr2 (310-487)||(21487106-21487282)
chr2 (314-475)||(4553561-4553723)
chr2 (309-360)||(2098824-2098875)
chr2 (410-487)||(2098939-2099016)
chr2 (365-446)||(34362649-34362730)
[»] scaffold0021 (1 HSPs)
scaffold0021 (310-487)||(107691-107867)
[»] scaffold0691 (1 HSPs)
scaffold0691 (336-487)||(6994-7141)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 488 - 825
Target Start/End: Complemental strand, 7141738 - 7141403
Alignment:
Q  488 ccacaactatataagttaatttccttcacaaaatttatttacaacaaaaatttatctctcctcactcttctctctcgtgcatcccccgctaccaacgcca 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141738 ccacaactatataagttaatttccttcacaaaatttatttacaacaaaa-tttatctctcctcactcttctctctcgtgcatcccccgctaccaacgcca 7141640  T
Q  588 cctgacgtcgccatttagctgtttctcaactgaatcataagaacatgatagtgaatcgaagctctcgtcaaatcactcacccgcgtgaaaccccatttct 687  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||  ||||||||    
T  7141639 cctgacgtcgccatttagctgtttctcaactgaatcatgagaacatcatagtgaatcgaagctctcgtcaaaccactcacccgcgtgaaa-tccatttct 7141541  T
Q  688 tgtgttgttgctttgtaaatgtgttattgatcatctttctgagtctaaatgtgtacacatatttgtgatcagaccgttttaaaattttagcatttttgga 787  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7141540 tgtgttgtcgctttgtaaatgtgttgttgatcatctttctgagtctaaatatgtacaaatatttgtgatcagaccgttttaaaattttagcatttttgga 7141441  T
Q  788 gaagtttcaaatgtgatttttattagatatatatgtta 825  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7141440 gaagtttcaaatgtgatttttattagatatatatgtta 7141403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 314 - 487
Target Start/End: Original strand, 46494401 - 46494574
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  46494401 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 46494500  T
Q  414 ctagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  46494501 ctagtggggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaaacctttggagtt 46494574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 314 - 487
Target Start/End: Complemental strand, 51066622 - 51066449
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  51066622 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattatatttacctccctccaaaggca 51066523  T
Q  414 ctagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51066522 ctagcggagctcgaacccgagttctctcggattcaagacctgtctttttaccactagaccaagtctttggagtt 51066449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 30 - 287
Target Start/End: Complemental strand, 7141983 - 7141724
Alignment:
Q  30 atttgtggtagaagcggtgtttcgagacttttgcaatattagagcctttggatgtgaaaaattccgaaaaggaaatgttagnnnnnnnnnnnnnnnn-aa 128  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||                 ||    
T  7141983 atttgtggtagaaacggtgtttcgacacttttgcaatattagagccttgggatgtgaaaaattccgaaaagaaaatgttagttttttttttcttttttaa 7141884  T
Q  129 agcggaaaggaaatgttagtgtttttgagtggtgagatagttctaatacatttagaaaccggttaagaagtctaaaaagttaggatagaactttgataac 228  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| ||||||    
T  7141883 agcggaaaggaaaagttagtgtttttgagtggtgagatagttctaatacatttag-aaccggttaagaagtctaaaatgttacgatagaacttcgataac 7141785  T
Q  229 tatgtgttga--cgcgaataactgagtccgattttgttccaatccaccacaactatataag 287  Q
    ||||||||||  |||||||||||||||||| |||| |||||||||||||||||||||||||    
T  7141784 tatgtgttgaaccgcgaataactgagtccggttttattccaatccaccacaactatataag 7141724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 311 - 487
Target Start/End: Complemental strand, 36192673 - 36192498
Alignment:
Q  311 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaag 410  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||    
T  36192673 aaattttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcatttacaaaagtaattacatttacctccctccaaag 36192574  T
Q  411 gcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| || |||||||||||    
T  36192573 gcactagtggggctcgaacccgggttctctcgaattcaagacctgtctttttaccac-agactaaacctttggagtt 36192498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 7173584 - 7173761
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| | ||||||    
T  7173584 aaaattttagggtgaggggatggtgccccagtccaacgcagggaagaccttcgggctcaaagagcacttacaaaggtattgacatttacctccttccaaa 7173683  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| ||| || |||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7173684 ggcactagcgggtcttgaacctaggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 7173761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 39863777 - 39863954
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||| ||| | |||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||    
T  39863777 aaaattttagggtgaggggatagtgtctcagtccaaggtagagaagaccttcgggttcaaagagcacttacaaaggtaattacatttacttccctccaaa 39863876  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39863877 ggcactagcggggtccgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 39863954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 341 - 487
Target Start/End: Complemental strand, 8740550 - 8740404
Alignment:
Q  341 tccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcactagtggggctcgaacccgggttctct 440  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| |||||    
T  8740550 tccaaggcatggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcgaacccgggatctct 8740451  T
Q  441 cggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8740450 cggattcaagacctgtctttttaccactagaccaagcctttggagtt 8740404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 310 - 463
Target Start/End: Original strand, 51713964 - 51714117
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||    
T  51713964 aaaattttagggtgaggggatggtgccccagttcaaagcagggaagaccttcgggctcaaagagcacttacaaaggtatttatatttacctcccttcaaa 51714063  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtcttttta 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51714064 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtcatttta 51714117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 310 - 481
Target Start/End: Complemental strand, 32139297 - 32139126
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||| |||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||    
T  32139297 aaaaatttagggtgaagggatggtgccccagtccaaggcagagaagaccttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaa 32139198  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagccttt 481  Q
    | |||||| |||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  32139197 gacactagcggggttcgaacccaggttctctcggattcatgacctgtccttttaccactagaccaagccttt 32139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 50905881 - 50905704
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||  ||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||||||  |||||||    
T  50905881 aaaattttagggtgaaaggatggtgccccagttcaaggcatggaagaccttcggactcaaagagcacctacaaagataattacatttacctctctccaaa 50905782  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  50905781 ggcactagcggggctcgaacccagattctctcggattcaagacctgtctttttaccactagactaaacctttggagtt 50905704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 310 - 463
Target Start/End: Original strand, 30970383 - 30970536
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||| ||| ||||    
T  30970383 aaaattttagggtgaggggatggtgccccagtctaaggtagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctcccttcaaa 30970482  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtcttttta 463  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  30970483 ggcactagtgaggctcgaacccggattctctcggattcaagacctgtcatttta 30970536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 314 - 479
Target Start/End: Original strand, 2294719 - 2294878
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| || |||||      |||||||||||||||| ||||||||||||    
T  2294719 ttttagggtgaggggatggtgccccagtctaaggcagtgaagactttcgggctcaacgaacactt------gtaattacatttaccttcctccaaaggca 2294812  T
Q  414 ctagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcct 479  Q
    |||| |   |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  2294813 ctagcgaaactcgaacccgagttctctcgaattcaagacctgtctttttaccactagaccaagcct 2294878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 310 - 414
Target Start/End: Complemental strand, 29576548 - 29576444
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||    
T  29576548 aaaattttagggtgagggggtggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaagttatttacatttacctccctccaaa 29576449  T
Q  410 ggcac 414  Q
    |||||    
T  29576448 ggcac 29576444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 310 - 415
Target Start/End: Complemental strand, 55231820 - 55231715
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||||| ||| ||||    
T  55231820 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagacattcaggctcaaagagcacttacaaaagtatttacatttacctcccttcaaa 55231721  T
Q  410 ggcact 415  Q
    ||||||    
T  55231720 ggcact 55231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 310 - 449
Target Start/End: Original strand, 47626992 - 47627133
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||||| | |||||||| | ||| | ||||| |||||||||||| ||| ||||    
T  47626992 aaaattttagggtgaggagatggtgttccagtccaaggcagggaagaccttcgagttcaaagagtatttatagaggtatttacatttacctcccttcaaa 47627091  T
Q  410 ggcactagtgggg--ctcgaacccgggttctctcggattcaa 449  Q
    |||||||||||||  |||||| ||||||||||||||||||||    
T  47627092 ggcactagtggggctctcgaatccgggttctctcggattcaa 47627133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 22304090 - 22304167
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggta 387  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22304090 aaaattttagggtgagaggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggta 22304167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 310 - 428
Target Start/End: Complemental strand, 2570334 - 2570216
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || ||| || | || ||| |||||||| ||||||||    
T  2570334 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagatcttcggactcaaagaacatttataatgatatttatatttacctccctccaaa 2570235  T
Q  410 ggcactagtggggctcgaa 428  Q
    ||||| || || |||||||    
T  2570234 ggcaccagcggagctcgaa 2570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 310 - 405
Target Start/End: Complemental strand, 676861 - 676766
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctc 405  Q
    ||||||||| ||| |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  676861 aaaattttaaggtaaggggatggtgttacagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacacttacctccctc 676766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 314 - 419
Target Start/End: Complemental strand, 41523526 - 41523421
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    ||||||| ||| ||||||||| |||| ||||||  |||||||||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||| ||    
T  41523526 ttttaggatgaagggatggtgtcccaatccaagatagggaagaccttcgagctcaaagagcacttataaaggtatttacatttacctccctccaaagaca 41523427  T
Q  414 ctagtg 419  Q
    ||||||    
T  41523426 ctagtg 41523421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 313 - 432
Target Start/End: Original strand, 51279035 - 51279154
Alignment:
Q  313 attttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggc 412  Q
    ||||||||||||||||||||||||  | |||||||  ||||||||||| |||||||||||||||||||||| ||| ||||||| |||| |||| ||| ||    
T  51279035 attttagggtgaggggatggtgccttaatccaaggttgggaagacctttgggctcaaagagcacttacaaaagtatttacattgacctccctctaaaagc 51279134  T
Q  413 actagtggggctcgaacccg 432  Q
    | |||| |||||| ||||||    
T  51279135 attagtagggctcaaacccg 51279154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 315 - 432
Target Start/End: Original strand, 50399646 - 50399763
Alignment:
Q  315 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcac 414  Q
    ||||||||||| ||||| |||||   ||||||| || |||||| ||  |||||||||| |||||||||||||| |||||||||||| |||||||  ||||    
T  50399646 tttagggtgagcggatgatgcccttatccaaggtagagaagacatttaggctcaaagaacacttacaaaggtatttacatttaccttcctccaagagcac 50399745  T
Q  415 tagtggggctcgaacccg 432  Q
    ||| ||||||||||||||    
T  50399746 tagcggggctcgaacccg 50399763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 310 - 410
Target Start/End: Original strand, 4080551 - 4080651
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||| || ||||||||||||| ||| |||||| ||| |||||| ||| | ||||||||||| ||||||| |||||||||||||||| ||||||||    
T  4080551 aaaattttaaggcgaggggatggtgctccaatccaagacagagaagacattcagactcaaagagcatttacaaatgtaattacatttacctccctccaaa 4080650  T
Q  410 g 410  Q
    |    
T  4080651 g 4080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 340 - 487
Target Start/End: Complemental strand, 22423479 - 22423339
Alignment:
Q  340 gtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcactagtggggctcgaacccgggttctc 439  Q
    |||||| ||||||||||||||||  | |||||| |||||||||| ||| |||||||||||| |||||||||| ||||   ||||||||| ||| | ||||    
T  22423479 gtccaaagcagggaagaccttcgaacacaaagaacacttacaaaagtatttacatttacctccctccaaaggtactaaccgggctcgaatccgagatctc 22423380  T
Q  440 tcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    || ||||||       ||||||||||||| |||||| | |||||||||    
T  22423379 tcagattca-------tctttttaccacttgaccaaacatttggagtt 22423339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 314 - 376
Target Start/End: Original strand, 23084468 - 23084530
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcac 376  Q
    ||||||||||||| |||||| ||||||| ||||| ||||||||||||||| ||||||||||||    
T  23084468 ttttagggtgaggagatggtaccccagttcaaggtagggaagaccttcggactcaaagagcac 23084530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 37990599 - 37990663
Alignment:
Q  315 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcactta 379  Q
    |||||| |||||| ||||||||||||||||||| |||||||| |||| ||||||||||| |||||    
T  37990599 tttaggatgagggaatggtgccccagtccaaggtagggaagatcttcaggctcaaagagtactta 37990663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 51066283 - 51066240
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagac 357  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  51066283 ttttagggtgaggggatggtgccccagttcaaggcagggaagac 51066240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 448 - 487
Target Start/End: Complemental strand, 51066244 - 51066205
Alignment:
Q  448 aagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  51066244 aagacttgtctttttaccactagaccaagtctttggagtt 51066205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 408
Target Start/End: Complemental strand, 40012645 - 40012548
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaa 408  Q
    |||| ||||| ||||| ||| |||| || ||||||| | ||||||||||||  | ||||| ||||||| ||||||| | |||||||||||| |||||||    
T  40012645 aaaaatttagtgtgagaggacggtgtcctagtccaacgtagggaagaccttatgactcaa-gagcactcacaaagggatttacatttacctccctccaa 40012548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 364
Target Start/End: Original strand, 28202598 - 28202643
Alignment:
Q  319 gggtgaggggatggtgccccagtccaaggcagggaagaccttcggg 364  Q
    ||||||||||||||||| |||||| ||| |||| ||||||||||||    
T  28202598 gggtgaggggatggtgctccagtctaagacaggaaagaccttcggg 28202643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 317 - 398
Target Start/End: Complemental strand, 28202782 - 28202701
Alignment:
Q  317 tagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttac 398  Q
    |||||||||||||||||||  || |  |||||| |||||| |||| |||||| ||| |||||||||| | | ||||||||||    
T  28202782 tagggtgaggggatggtgcatcaattaaaggcaaggaagatcttcaggctcatagaacacttacaaatgcatttacatttac 28202701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 180; Significance: 1e-96; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 310 - 493
Target Start/End: Complemental strand, 35109824 - 35109641
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35109824 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 35109725  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagttccacaa 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35109724 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagttccacaa 35109641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 311 - 487
Target Start/End: Original strand, 38265237 - 38265413
Alignment:
Q  311 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaag 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38265237 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 38265336  T
Q  411 gcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38265337 gcactagcggggctcgaacccaggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 38265413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 21577097 - 21577274
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||    
T  21577097 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtatttacatttacctccctccaaa 21577196  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21577197 ggcattagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagtt 21577274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 34721967 - 34721790
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34721967 aaaattttagggtgaggggatggtgcccgagtccaaggcagggaagtccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 34721868  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34721867 ggcactagcggggcttgaatccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 34721790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 314 - 487
Target Start/End: Original strand, 16059356 - 16059529
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||    
T  16059356 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcagagagcacttacaaaggtaattacatttacctccctgcaaaggca 16059455  T
Q  414 ctagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16059456 ctagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagtccaagcctttggagtt 16059529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 144; E-Value: 4e-75
Query Start/End: Original strand, 310 - 476
Target Start/End: Complemental strand, 41151306 - 41151139
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaa-ggtaattacatttacctacctccaa 408  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  41151306 aaaaatttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaaggtaattacatttacctccctccaa 41151207  T
Q  409 aggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaag 476  Q
    || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41151206 agacactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaag 41151139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 314 - 487
Target Start/End: Original strand, 18116947 - 18117120
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| ||||||||||||||||||||||| |||| |||||||    
T  18116947 ttttagggtgaggggatggtgccccagtccaaggcagggaagatcttcgacctcaaagagcacctacaaaggtaattacatttacctccctctaaaggca 18117046  T
Q  414 ctagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18117047 ctagcgtggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaacaagcctttggagtt 18117120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 314 - 488
Target Start/End: Original strand, 38405157 - 38405331
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  38405157 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaagataattacatttacctccctccaaaggca 38405256  T
Q  414 ctagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagttc 488  Q
    |||| | ||||||||| ||  |||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  38405257 ctagcgaggctcgaactcgaattctctcggattcaagacctgtctttttaccactagacgaagcctttgaagttc 38405331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 310 - 484
Target Start/End: Complemental strand, 45278585 - 45278411
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||| | ||| ||||    
T  45278585 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagacattcgggtttaaagagcacttacaaagataattacatttacttcccttcaaa 45278486  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgga 484  Q
    |||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  45278485 ggcactagcggggctcgaacccgggttatctcggattcaagacctatctttttaccactagaccaagactttgga 45278411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 316 - 487
Target Start/End: Complemental strand, 11216896 - 11216725
Alignment:
Q  316 ttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcact 415  Q
    |||||||||||| ||| ||||| ||||||| | || |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  11216896 ttagggtgagggaatgatgccctagtccaaagtagagaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcact 11216797  T
Q  416 agtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    | |||||||||||||||||||||||| |||||||||||||||  |||||||||||||||| |||||||||||    
T  11216796 aatggggctcgaacccgggttctctcagattcaagacctgtcactttaccactagaccaaacctttggagtt 11216725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 315 - 449
Target Start/End: Complemental strand, 12472249 - 12472115
Alignment:
Q  315 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcac 414  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  12472249 tttagggtgaggggatggtaccccagtccaagacagggaagaccttcgtgctcaaagagcacttacaaaggtaattatatttacctccctccaaaggcac 12472150  T
Q  415 tagtggggctcgaacccgggttctctcggattcaa 449  Q
    |||||||||||||||||||||||||||||||||||    
T  12472149 tagtggggctcgaacccgggttctctcggattcaa 12472115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 310 - 425
Target Start/End: Original strand, 37095209 - 37095324
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37095209 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 37095308  T
Q  410 ggcactagtggggctc 425  Q
    | |||||| |||||||    
T  37095309 gacactagcggggctc 37095324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 314 - 484
Target Start/End: Complemental strand, 48176529 - 48176359
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggc-agggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggc 412  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||||| |||||||| | |||||||||| ||| |||||||||||| | |||||||||    
T  48176529 ttttagggtgaggggatggtgccccagtccaaggggagggaaaaccttccggctcaaaaaacacttacaaaagtatttacatttacctccttccaaaggc 48176430  T
Q  413 actagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgga 484  Q
    ||||| ||||||||||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  48176429 actagcggggctcgaacccggattctctcggatttaagatctgtctttttacca-tagaccaagcctttgga 48176359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 310 - 430
Target Start/End: Original strand, 245263 - 245383
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||| |||||||     
T  245263 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgtttacaaagataattacatttacctccctccaag 245362  T
Q  410 ggcactagtggggctcgaacc 430  Q
    |||||||| ||||||||||||    
T  245363 ggcactagcggggctcgaacc 245383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 310 - 442
Target Start/End: Complemental strand, 23028816 - 23028684
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||| |||| |||||||| | ||||| |||| ||||||| |||||||| ||||| | |||||| |||||||||||||||||| | |||| |||    
T  23028816 aaaattttaggatgagaggatggtgtctcagtctaaggtagggaaggccttcgggttcaaaaaacacttataaaggtaattacatttacatccctctaaa 23028717  T
Q  410 ggcactagtggggctcgaacccgggttctctcg 442  Q
    |||| ||| || | |||||||||| ||||||||    
T  23028716 ggcattagaggagttcgaacccggattctctcg 23028684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 310 - 411
Target Start/End: Complemental strand, 28407637 - 28407540
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||||| ||||||||  |    |||||||||||||||||||||||||||| ||| |||||||||||| |||| |||    
T  28407637 aaaattttagggtgaggggatggtgccccaatccaaggcttg----accttcgggctcaaagagcacttacaaaagtatttacatttacctccctctaaa 28407542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 433 - 487
Target Start/End: Complemental strand, 40038675 - 40038621
Alignment:
Q  433 ggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  40038675 ggttctctcagattcaagacctgtctttttaccactagatcaagtctttggagtt 40038621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 315 - 405
Target Start/End: Complemental strand, 24123117 - 24123021
Alignment:
Q  315 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcg------ggctcaaagagcacttacaaaggtaattacatttacctacctc 405  Q
    ||||||||||| |||||||| |||| |||||||||| |||||||||||      |  |||||||  |||||||||||||||||||||||||| ||||    
T  24123117 tttagggtgagaggatggtgacccaatccaaggcagagaagaccttcgaattcagattcaaagaatacttacaaaggtaattacatttaccttcctc 24123021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 39234896 - 39234853
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcaggga 353  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  39234896 aaaatttttgggtgaggggatggtgccccagtccatggcaggga 39234853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 171; Significance: 3e-91; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 309 - 487
Target Start/End: Complemental strand, 8400989 - 8400811
Alignment:
Q  309 taaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaa 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8400989 taaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 8400890  T
Q  409 aggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400889 aggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 8400811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 3e-88
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 7417931 - 7417754
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7417931 aaaattttagggtgaggggatggtgccccagtccaaggcagtgaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 7417832  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7417831 ggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 7417754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 1e-81
Query Start/End: Original strand, 310 - 488
Target Start/End: Complemental strand, 35198898 - 35198720
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  35198898 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctgcaaa 35198799  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagttc 488  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35198798 ggcattagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagttc 35198720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 22856020 - 22855843
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  22856020 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagacctttgggcttaaagagcacttacaaaggtaattacatttacctccctccaaa 22855921  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    | |||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  22855920 gacactagcggggctcgaacctgggttctctcgaatttaagacctgtctttttaccactagaccaaacctttggagtt 22855843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 310 - 460
Target Start/End: Complemental strand, 50823831 - 50823681
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50823831 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 50823732  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtcttt 460  Q
    |||||||  ||| ||||||||||| |||||||||||||||||| |||||||    
T  50823731 ggcactaacgggactcgaacccggattctctcggattcaagacttgtcttt 50823681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 310 - 460
Target Start/End: Original strand, 50852029 - 50852179
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50852029 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 50852128  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtcttt 460  Q
    |||||||  ||| ||||||||||| |||||||||||||||||| |||||||    
T  50852129 ggcactaacgggactcgaacccggattctctcggattcaagacttgtcttt 50852179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 314 - 478
Target Start/End: Complemental strand, 55468129 - 55467964
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggg-ctcaaagagcacttacaaaggtaattacatttacctacctccaaaggc 412  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||| ||    
T  55468129 ttttagggtgaggggatggtgccccagtccaaggcagagaagaccttcggggctcaaagagcacttacaaaggtatttacatttacctccctccaaacgc 55468030  T
Q  413 actagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcc 478  Q
    | ||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||||    
T  55468029 attagtggggctcgaacccggattctctcgaattcaagacatgtcattttaccactagaccaagcc 55467964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 314 - 487
Target Start/End: Complemental strand, 34824685 - 34824512
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||    
T  34824685 ttttagggtgaggggatggtgccccagtccaaggccgggaagaccttcgggatcaaagagcacttacaaagataattacatttacctcccttcaaaggca 34824586  T
Q  414 ctagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||  ||| ||||||| | ||||||||||||||||||| || ||||||||||||||||||||  ||||||||||    
T  34824585 ctaacgggactcgaactcaggttctctcggattcaagatctatctttttaccactagaccaaatctttggagtt 34824512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 52545454 - 52545277
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||| |||||||||||| |||  |||    
T  52545454 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagactacttacaaaagtatttacatttacctccctttaaa 52545355  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| ||||||||||||||  || |||||||||||||||||||| ||||| ||| ||||||| ||||| |||||    
T  52545354 ggcactagcggggctcgaacccgaattttctcggattcaagacctgtcattttatcaccagaccaaacctttcgagtt 52545277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 314 - 472
Target Start/End: Original strand, 43334057 - 43334215
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||| ||| ||    
T  43334057 ttttagggtgaggggatggtaccccagtccaaggcagggaagaccttcgggctcaaatagcacttacaaaagtatttacatttacctccctcccaagaca 43334156  T
Q  414 ctagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagac 472  Q
    |||| ||||||||||| ||||||||||||||||||| || |||| ||||||| ||||||    
T  43334157 ctagcggggctcgaactcgggttctctcggattcaaaacttgtcattttacctctagac 43334215  T

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Target: chr3; HSP #11
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 347 - 487
Target Start/End: Original strand, 48077977 - 48078117
Alignment:
Q  347 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcactagtggggctcgaacccgggttctctcggatt 446  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||||||||||| |||||||||||| ||||||||| |||    
T  48077977 gcagggaagaccttcaggctcaaagagcacttacaaagatatttacatttaccttcctccaaaggcactagtgaggctcgaacccgagttctctcgaatt 48078076  T
Q  447 caagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  48078077 caagacctgtcattttaccactagaccaagcctttgaagtt 48078117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 22371729 - 22371832
Alignment:
Q  311 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaag 410  Q
    |||||||||||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  22371729 aaattttagggtgaggggatggtgccccagtctaaagcagggaagatcttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaag 22371828  T
Q  411 gcac 414  Q
    ||||    
T  22371829 gcac 22371832  T

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Target: chr3; HSP #13
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 310 - 396
Target Start/End: Original strand, 37330606 - 37330692
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37330606 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtaattacattt 37330692  T

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Target: chr3; HSP #14
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 311 - 396
Target Start/End: Original strand, 30534902 - 30534987
Alignment:
Q  311 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 396  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30534902 aaattttagggtgaggggatggtaccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacattt 30534987  T

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Target: chr3; HSP #15
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 311 - 428
Target Start/End: Complemental strand, 29636001 - 29635883
Alignment:
Q  311 aaattttagggtgaggggat-ggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||| ||||||| || ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||| ||||    
T  29636001 aaattttagcgtgagggaattggtgccccactccaaggcagggaagacattcgggcttaaagagcacttacaaaggtaattacatttacctcccttcaaa 29635902  T
Q  410 ggcactagtggggctcgaa 428  Q
    |||||||| | ||||||||    
T  29635901 ggcactagcgaggctcgaa 29635883  T

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Target: chr3; HSP #16
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 317 - 458
Target Start/End: Original strand, 50726003 - 50726144
Alignment:
Q  317 tagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcacta 416  Q
    |||||||| |||||||||||||| ||||| | ||||||||| ||||  |||||| || ||||||||| ||||||| |||||||| ||||||||| |||||    
T  50726003 tagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacacta 50726102  T
Q  417 gtggggctcgaacccgggttctctcggattcaagacctgtct 458  Q
      ||||||||||||||  ||||||||||||||||||||||||    
T  50726103 acggggctcgaacccgaattctctcggattcaagacctgtct 50726144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 317 - 458
Target Start/End: Complemental strand, 50786845 - 50786704
Alignment:
Q  317 tagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcacta 416  Q
    |||||||| |||||||||||||| ||||| | ||||||||| ||||  |||||| || ||||||||| ||||||| |||||||| ||||||||| |||||    
T  50786845 tagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttcctccaaagacacta 50786746  T
Q  417 gtggggctcgaacccgggttctctcggattcaagacctgtct 458  Q
      ||||||||||||||  ||||||||||||||||||||||||    
T  50786745 acggggctcgaacccgaattctctcggattcaagacctgtct 50786704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 310 - 414
Target Start/End: Original strand, 19872482 - 19872586
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||||| |||||||||||||||||  ||||||| ||||||||    
T  19872482 aaaattttaggatgaggggatggtgccccagtccaagacagggaagaccttcggattcaaagagtacttacaaaggtaattaattttaccttcctccaaa 19872581  T
Q  410 ggcac 414  Q
    |||||    
T  19872582 ggcac 19872586  T

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Target: chr3; HSP #19
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 310 - 396
Target Start/End: Original strand, 37454743 - 37454829
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 396  Q
    |||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37454743 aaaattttagggtgaggggatggtgccccaatctaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattatattt 37454829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 315 - 469
Target Start/End: Complemental strand, 42876343 - 42876189
Alignment:
Q  315 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcac 414  Q
    ||||||||||| ||||||||||| ||||||||  ||||||||| |||  | ||||||||||||||||||||||||||||||||||| | || |||| |||    
T  42876343 tttagggtgagaggatggtgccctagtccaagatagggaagacattcaagttcaaagagcacttacaaaggtaattacatttacctccatctaaagacac 42876244  T
Q  415 tagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccacta 469  Q
    |||| |||||||||| || | || |||| || ||||| || ||||||||||||||    
T  42876243 tagtcgggctcgaactcgagatccctcgaatacaagatctatctttttaccacta 42876189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 310 - 383
Target Start/End: Original strand, 25910665 - 25910738
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaa 383  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||    
T  25910665 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagatcttcggactcaaagagcacttacaaa 25910738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 310 - 411
Target Start/End: Complemental strand, 25589347 - 25589253
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||| |||||||| |||||||||||||       |||| |||||||||||||||| |||||| |||||||||||| | ||||||    
T  25589347 aaaattttagggtgaggggagggtgcccccgtccaaggcaggg-------tcggactcaaagagcacttactaaggtatttacatttacctccttccaaa 25589255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 39438828 - 39438995
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||| ||||||||||||| ||||| ||| ||||| || ||  | ||||| |||||||||||||         ||||| |||| |||    
T  39438828 aaaattttagggtgaggg-atggtgccccagttcaaggtaggaaagacttttggatttaaagaacacttacaaaggt---------taccttcctctaaa 39438917  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| ||   | ||||| || ||||||||||||||||| ||||||||||| ||||| | |||||||||| ||||    
T  39438918 ggcactagcggaatttgaacctggattctctcggattcaagatctgtctttttaacactatagcaagcctttgaagtt 39438995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 314 - 400
Target Start/End: Original strand, 30203657 - 30203740
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacct 400  Q
    |||||| ||||||||||||||||||||| |||| || |||| ||||||| ||||||||| || ||||||||||  ||||||||||||    
T  30203657 ttttagagtgaggggatggtgccccagttcaagaca-ggaaaaccttcgagctcaaagaacatttacaaaggt--ttacatttacct 30203740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 773710 - 773666
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaa 354  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||    
T  773710 aaaattctagggtgaggggatggtgccccagtccaaggaagggaa 773666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 380 - 471
Target Start/End: Complemental strand, 5549061 - 5548970
Alignment:
Q  380 caaaggtaattacatttacctacctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactaga 471  Q
    |||||||| ||||||||| || |||||||| ||| ||||   ||||||| ||  | ||||||||||| ||||||| ||||||||||||||||    
T  5549061 caaaggtatttacatttatctccctccaaaagcattagtaaagctcgaatccaagatctctcggattgaagacctatctttttaccactaga 5548970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 31297529 - 31297574
Alignment:
Q  316 ttagggtgaggggatggtgccccagtccaaggcagggaagaccttc 361  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||||    
T  31297529 ttagggtgagggcatggttccccagtccaaggcaaggaagaccttc 31297574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 14848620 - 14848552
Alignment:
Q  315 tttagggtgaggggatggtgcccc-agtccaaggcagggaagaccttcgggctcaaagagcacttacaaa 383  Q
    |||||||| ||||| ||||||||| ||||||||||||| || |||||| ||||||||| ||||| |||||    
T  14848620 tttagggtaagggg-tggtgcccctagtccaaggcaggaaaaaccttcaggctcaaagggcactcacaaa 14848552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 2e-83; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 19723444 - 19723267
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19723444 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagatctttgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 19723345  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19723344 ggcactagcggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttggagtt 19723267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 11404134 - 11403957
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  11404134 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 11404035  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    | |||||| | ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||| ||||||||||    
T  11404034 gacactagcgaggctcgaacccaggttctctcgaattcaagacctgtcattttaccactagaccaagtctttggagtt 11403957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 32296638 - 32296815
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  32296638 aaaattttagggtgaggggatggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcccttcaaa 32296737  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    ||||||||  ||||| ||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  32296738 ggcactagcagggcttgaacccgggttctctcaaattcaagacctgtctttttaccactagaccaaacctttggagtt 32296815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 311 - 487
Target Start/End: Complemental strand, 4840272 - 4840096
Alignment:
Q  311 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaag 410  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||| |||||||||| |||||||||    
T  4840272 aaattttagggtgaggggatggtgccctagtccaaggcagggaagacctttggactcaaagagcacttacaatggtaatgacatttacctccctccaaag 4840173  T
Q  411 gcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  4840172 gcactagcggggctcgaacccgggttctctcggattcaaaacctatctttttaccactagaccaagcctttggagtt 4840096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 22711642 - 22711465
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  22711642 aaaattttaggatgaggggatggtgccccagtccaaggcaaggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 22711543  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||| |||| || ||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22711542 ggcattagttggactcaaacccgagttctctcggattcaagacctgtctttttaccactagaccaaacctttggagtt 22711465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 314 - 486
Target Start/End: Original strand, 28739564 - 28739736
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  28739564 ttttagggtgaggggatggtgctgcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttactttcctccaaaggca 28739663  T
Q  414 ctagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagt 486  Q
    ||||||||||| |||||| |||||||| | |||||||||||||| ||||||||||||||||||||||||||||    
T  28739664 ctagtggggcttgaacccaggttctctagaattcaagacctgtcattttaccactagaccaagcctttggagt 28739736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 310 - 462
Target Start/End: Complemental strand, 29767319 - 29767169
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||| ||| ||||    
T  29767319 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagaacacttacaaaggtaatt--atttacctcccttcaaa 29767222  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtcttttt 462  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||||||||||||    
T  29767221 ggcactagcggggctcgaccccgggttctctcagattcaagacctgtcttttt 29767169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 11610413 - 11610236
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||||||||||||  | | |||||||||||||| ||| ||||||||||||| || ||| ||||||||  |||||||    
T  11610413 aaaattttagggtgaggggatggtgccccagtccaagataagtaagaccttcgggcttaaacagcacttacaaagatatttatatttacctttctccaaa 11610314  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| | |||||||| ||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11610313 ggcactagcgaggctcgaatccgagatctctcggattcaagacctgtctttttaccactagaccaaacctttggagtt 11610236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 41553418 - 41553244
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| | ||||||||    
T  41553418 aaaattttagggtgaggggatggtgctccagtctaaggcagggaagaccttcgagctcaaagaacacttacaaaggtatttacatttacgttcctccaaa 41553319  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    | || ||||||| ||||||| |||||||||||| ||||||||||| || |||||||||   | |||||||||||||||    
T  41553318 gacattagtgggactcgaactcgggttctctcgaattcaagacctatcattttaccac---atcaagcctttggagtt 41553244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 30682971 - 30682795
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||| ||  |||||||    
T  30682971 aaaattttaaggtgaggggatggtgccc-agtccaaggcagggaagatcttcgggctcaaagaacacttacaaaagtatttacatttatctctctccaaa 30682873  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    ||||| |||||||||||||| |||| ||||| | |||||||| ||| | || ||||||||||||||||||||||||||    
T  30682872 ggcaccagtggggctcgaacacgggctctcttgaattcaagaactgccattgtaccactagaccaagcctttggagtt 30682795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 314 - 425
Target Start/End: Complemental strand, 17095679 - 17095568
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  17095679 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 17095580  T
Q  414 ctagtggggctc 425  Q
    |||| |||||||    
T  17095579 ctagcggggctc 17095568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 367 - 487
Target Start/End: Original strand, 27881044 - 27881164
Alignment:
Q  367 caaagagcacttacaaaggtaattacatttacctacctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttacca 466  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  27881044 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 27881143  T
Q  467 ctagaccaagcctttggagtt 487  Q
    |||||||||||||||||||||    
T  27881144 ctagaccaagcctttggagtt 27881164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 367 - 487
Target Start/End: Original strand, 28021225 - 28021345
Alignment:
Q  367 caaagagcacttacaaaggtaattacatttacctacctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttacca 466  Q
    ||||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  28021225 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctcagattcaagacctgtcattttacca 28021324  T
Q  467 ctagaccaagcctttggagtt 487  Q
    |||||||||||||||||||||    
T  28021325 ctagaccaagcctttggagtt 28021345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 344 - 488
Target Start/End: Original strand, 24475029 - 24475173
Alignment:
Q  344 aaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcactagtggggctcgaacccgggttctctcgg 443  Q
    |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| || |||||||  ||  |||| ||||    
T  24475029 aaggcaggaaagaccttcgggctcaaagaacacttacaaaggtatttacatttacctccctccaaaggcactagcggagctcgaattcgaattctatcgg 24475128  T
Q  444 attcaagacctgtctttttaccactagaccaagcctttggagttc 488  Q
    |||||||||||||| | |||| |||||||||||||||||||||||    
T  24475129 attcaagacctgtcatcttactactagaccaagcctttggagttc 24475173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 310 - 410
Target Start/End: Complemental strand, 36261779 - 36261679
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36261779 aaaattttaaggtgaggggatggtgccccagttcaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36261680  T
Q  410 g 410  Q
    |    
T  36261679 g 36261679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 331 - 414
Target Start/End: Original strand, 21355004 - 21355087
Alignment:
Q  331 ggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcac 414  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21355004 ggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 21355087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 310 - 410
Target Start/End: Complemental strand, 43288205 - 43288105
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| | || |||||||||||||||||||||||| ||||||||    
T  43288205 aaaaatttagggtgaggggatggtgctccagtccaaggcagggaagaccttcggactcaaaaatcaattacaaaggtaattacatttacctccctccaaa 43288106  T
Q  410 g 410  Q
    |    
T  43288105 g 43288105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 314 - 397
Target Start/End: Original strand, 11909426 - 11909509
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattta 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  11909426 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttagaaaggtatttacattta 11909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 27879559 - 27879620
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 371  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||    
T  27879559 aaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 27879620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 28019740 - 28019801
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 371  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||    
T  28019740 aaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 28019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 419 - 486
Target Start/End: Complemental strand, 6097588 - 6097521
Alignment:
Q  419 ggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagt 486  Q
    ||||||||||| ||| |||||||| |||||||||||||||||||||||  ||||||||| ||||||||    
T  6097588 ggggctcgaactcggattctctcgaattcaagacctgtctttttaccataagaccaagcttttggagt 6097521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 44741919 - 44742038
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||| ||||||||||||||||||  ||||||||||||||||| |||||| | || ||    ||||||||||||||| | | | ||| || |  |||||||    
T  44741919 aaaaatttagggtgaggggatggcaccccagtccaaggcaggtaagaccataggact--tggagcacttacaaagggattaatattaacttctctccaaa 44742016  T
Q  410 ggcactagtggggctcgaaccc 431  Q
    |||||||| | |||||||||||    
T  44742017 ggcactagcgaggctcgaaccc 44742038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 2e-83; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 35163749 - 35163926
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  35163749 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 35163848  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35163849 ggcattagtggggctcgaaccctggttctctcggattcaagacctgtctttttaccactagaccaagcctttgaagtt 35163926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 311 - 481
Target Start/End: Original strand, 19686827 - 19686997
Alignment:
Q  311 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaag 410  Q
    ||||||||||||||||||||| |||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  19686827 aaattttagggtgaggggatgatgccccagtctaagggaggaaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctacaaag 19686926  T
Q  411 gcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagccttt 481  Q
    ||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| |||||    
T  19686927 gcactagaggggctcgaacccaggttctctcagattcaagacctgtttttttaccactagaccaaaccttt 19686997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 2711739 - 2711910
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||      |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||    
T  2711739 aaaattttagggtgaggggatggtg------tccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 2711832  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
     |||||||||||||||||| || |||||| |||||||||||||||||| ||||||||||||||||||||||| |||||    
T  2711833 agcactagtggggctcgaatccaggttctatcggattcaagacctgtcattttaccactagaccaagcctttcgagtt 2711910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 310 - 422
Target Start/End: Complemental strand, 20685458 - 20685346
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20685458 aaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 20685359  T
Q  410 ggcactagtgggg 422  Q
    |||||||| ||||    
T  20685358 ggcactagcgggg 20685346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 14505524 - 14505698
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||| ||||| || ||||||  | |||||||||| ||||||||||||| ||||||||    
T  14505524 aaaattttagg-tgaggggatggtgccccagtccaaggcacggaagatcttcgcgcccaaagaatatttacaaaggt-attacatttacctccctccaaa 14505621  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
     ||||||| ||||||||||  |||| |||||||||||||| || ||| |||||||| |||||||||||||||||||||    
T  14505622 agcactagcggggctcgaattcgggatctctcggattcaa-acttgtttttttacctctagaccaagcctttggagtt 14505698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 389 - 484
Target Start/End: Complemental strand, 14496406 - 14496311
Alignment:
Q  389 ttacatttacctacctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgga 484  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  14496406 ttacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctttctttttaccactagaccaaacctttgga 14496311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 310 - 417
Target Start/End: Complemental strand, 17948813 - 17948706
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||    
T  17948813 aaaattttaaggtgaggggatggtgtcccagtccaagacagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctctctccaaa 17948714  T
Q  410 ggcactag 417  Q
    | ||||||    
T  17948713 gacactag 17948706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 314 - 416
Target Start/End: Complemental strand, 15070254 - 15070152
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||| ||||||| |||||||| ||||||||||||    
T  15070254 tttttgggtgaggggatggtgccccagtctaaggcagggaagaccttcgggctcaatgaacacttacaaatgtaattatatttacctccctccaaaggca 15070155  T
Q  414 cta 416  Q
    |||    
T  15070154 cta 15070152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 24336718 - 24336641
Alignment:
Q  340 gtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcactag 417  Q
    ||||||||||||||||| |||| |||||||| | |||||||||| ||| |||||||||||| |||||||||| |||||    
T  24336718 gtccaaggcagggaagatcttcaggctcaaaaaacacttacaaaagtatttacatttacctccctccaaagggactag 24336641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 4e-81; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 17064456 - 17064279
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||    
T  17064456 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggcttaaagagcacttacaaaggtatttacatttacctccctccaaa 17064357  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17064356 ggcactagcgaggctcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 17064279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 314 - 487
Target Start/End: Original strand, 20983006 - 20983179
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||  |||| ||||||    
T  20983006 ttttagggtgaggggatggtgccccagtccaaggcagggaagactttcgggctcaaagagcacttacaaatgtaattgcatttacctctctccgaaggca 20983105  T
Q  414 ctagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  20983106 ctagcggggctcgaacccggattctcttggattcaagacctgtctttttatcactagaccaagcctttggagtt 20983179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 310 - 459
Target Start/End: Complemental strand, 37976683 - 37976530
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattac----atttacctacctc 405  Q
    |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||| ||||    |||||||| |||     
T  37976683 aaaattttagggtgaggggatggtgccccagttcaaggcaggaaaaaccttcgggctcaaatagcacttacaaaggtatttacattaatttacctccctt 37976584  T
Q  406 caaaggcactagtggggctcgaacccgggttctctcggattcaagacctgtctt 459  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  37976583 caaatgcactagcggggctcgaacccaggttctctcggattcaagacctgtctt 37976530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 309 - 476
Target Start/End: Complemental strand, 41910958 - 41910793
Alignment:
Q  309 taaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaa 408  Q
    |||||||||| |||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  41910958 taaaattttaaggtgaggggatggtgccccagttcaaggcagagaagacattcgggctcaaagaacacttacaaagttaattacatttacct-cctccaa 41910860  T
Q  409 aggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaag 476  Q
    ||  ||||      ||| |||||   ||||||| ||||||||||||||||||||||||||||| ||||    
T  41910859 agatacta-acaaactcaaacccaaattctctcagattcaagacctgtctttttaccactagagcaag 41910793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 316 - 410
Target Start/End: Complemental strand, 31673956 - 31673863
Alignment:
Q  316 ttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaag 410  Q
    ||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||| |||||| | |||||||| |||  ||||||||    
T  31673956 ttagggtgaggggttggtgccccagtccaaggcagggaggaccttagggctcaaagggcactt-caaagggatttacattttcctctctccaaag 31673863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 391 - 487
Target Start/End: Original strand, 35237103 - 35237199
Alignment:
Q  391 acatttacctacctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||||| ||| ||||| |||||| |||||||||| || | |||||||| ||||||||| | || ||||||||||||||||||||||| |||||    
T  35237103 acatttacctcccttcaaagacactagcggggctcgaatccagattctctcgaattcaagacgtatcattttaccactagaccaagcctttagagtt 35237199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 315 - 433
Target Start/End: Original strand, 39162859 - 39162977
Alignment:
Q  315 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttaca-aaggtaattacatttacct---acctccaaag 410  Q
    |||||||||| |||| |||||||||||||||||||  |||||||    ||||||||||||| ||||| |||||| ||||||||||||    ||||||| |    
T  39162859 tttagggtgatgggacggtgccccagtccaaggcacagaagacc----ggctcaaagagcatttacacaaggtatttacatttaccttcctcctccaagg 39162954  T
Q  411 gcactagtggggctcgaacccgg 433  Q
    |||||||| ||||||||||||||    
T  39162955 gcactagttgggctcgaacccgg 39162977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 310 - 426
Target Start/End: Original strand, 5009416 - 5009531
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||| ||||||| ||| ||||| ||||||| |||||||||||||  ||||||| || |||||||  || ||||||||| ||  |||||||    
T  5009416 aaaattttagggtg-ggggatgatgcaccagttcaaggcatggaagaccttcggattcaaagaacatttacaaaaatatttacatttatctctctccaaa 5009514  T
Q  410 ggcactagtggggctcg 426  Q
    | |||||  ||||||||    
T  5009515 gacactaacggggctcg 5009531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 35237059 - 35237102
Alignment:
Q  311 aaattttagggtgaggggatggtgccccagtccaaggcagggaa 354  Q
    ||||||||| |||||||||||||||| |||||||||||||||||    
T  35237059 aaattttagagtgaggggatggtgcctcagtccaaggcagggaa 35237102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 367
Target Start/End: Original strand, 38255559 - 38255614
Alignment:
Q  312 aattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctc 367  Q
    ||||||| ||||||| ||||||||||||||||||   |||||||||||| ||||||    
T  38255559 aattttaaggtgaggagatggtgccccagtccaaaatagggaagacctttgggctc 38255614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 18303352 - 18303409
Alignment:
Q  353 aagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaag 410  Q
    |||||||||||| | |||||||||||||||| ||| |||| ||||| | |||||||||    
T  18303352 aagaccttcgggtttaaagagcacttacaaaagtatttacgtttactttcctccaaag 18303409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 4e-81; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 314 - 487
Target Start/End: Original strand, 30054445 - 30054618
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  30054445 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 30054544  T
Q  414 ctagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  30054545 ctagcggggctcgaacccgggttctctcggattcaagacttgactttttaccactagaccaagcctttggagtt 30054618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 312 - 487
Target Start/End: Original strand, 30370061 - 30370236
Alignment:
Q  312 aattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaagg 411  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
T  30370061 aattttaaggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaga 30370160  T
Q  412 cactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||||||||||||||||| |||||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  30370161 cactagtggggctcgaacccggattctctcgaattcaaaacttgtctttttaccactagaccaagcctttggagtt 30370236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 45324139 - 45323962
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||    
T  45324139 aaaattttagggtgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaggagcacttacaaaggtatttacatttacctccctccaaa 45324040  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
     ||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45324039 agcactagcggggctggaacccaggttctctcggattcaagacctgtcgttttaccactagaccaagcctttggagtt 45323962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 12025314 - 12025137
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||    
T  12025314 aaaattttagggtgagggggtggtgccccagtccaaggcagggaagaccttcgggctcaaatagtacttacaaaggtaattacatttaccttcctccaaa 12025215  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    ||||||| |||||||||||||| |||||||||| |||||||| |||| ||||||||||||||||||| ||||||||||    
T  12025214 ggcactaatggggctcgaacccaggttctctcgaattcaagatctgtatttttaccactagaccaagtctttggagtt 12025137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 20014591 - 20014414
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||    
T  20014591 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcaggctcaaagagcatttacaaatgtaattacatttacctccctccaaa 20014492  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    || ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  20014491 ggtactagcgggactcgaacccgggttctctcggattcaagatctgtctttttaccactagaccaagactttggagtt 20014414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 314 - 484
Target Start/End: Complemental strand, 21090244 - 21090074
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||| ||||    
T  21090244 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaatgtatttacatttacctccctccaacggca 21090145  T
Q  414 ctagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttgga 484  Q
    |||| ||||||||||||||  |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  21090144 ctagcggggctcgaacccgaattctctcgaattcaagacctgtcattttaccactagaccaagcctttgga 21090074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 310 - 463
Target Start/End: Complemental strand, 4573512 - 4573359
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||| ||||| ||||||||  ||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||    
T  4573512 aaaattttagggtgaggggatagtgcctcagtccaaaacagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 4573413  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtcttttta 463  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4573412 gacattagtggggctcgaacccgggttctctcggattcaagacctgtcttttta 4573359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 311 - 487
Target Start/End: Original strand, 33763254 - 33763430
Alignment:
Q  311 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaag 410  Q
    ||||||||||||||||||||| ||||||||| |||||||||||| || |||||||||||| | ||||||||||||||||||||||| ||| |||| ||||    
T  33763254 aaattttagggtgaggggatgatgccccagttcaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctccctctaaag 33763353  T
Q  411 gcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    ||||||| ||||||||||||  | |||||||| ||||||||||||||||||||| |||||||||| ||||| |||||    
T  33763354 gcactagcggggctcgaacctagattctctcgaattcaagacctgtctttttactactagaccaaacctttagagtt 33763430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 312 - 456
Target Start/End: Original strand, 30850841 - 30850985
Alignment:
Q  312 aattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaagg 411  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||     
T  30850841 aattttagggtgaggggatggtgccccagtccaagacaggaaagaccttcgggttcaaagagcacttacaaaggcaattatatttacctccctccaaaga 30850940  T
Q  412 cactagtggggctcgaacccgggttctctcggattcaagacctgt 456  Q
    |||||  |||||||||||||| ||||||||||||| |||| ||||    
T  30850941 cactaacggggctcgaacccgagttctctcggatttaagatctgt 30850985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 311 - 417
Target Start/End: Complemental strand, 22024235 - 22024129
Alignment:
Q  311 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaag 410  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  22024235 aaattttagggtgaggggatggtgccccagtccaaggcagagaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccatccaaag 22024136  T
Q  411 gcactag 417  Q
    |||||||    
T  22024135 gcactag 22024129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 310 - 414
Target Start/End: Original strand, 14498078 - 14498182
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||    
T  14498078 aaaattttagggtgaggggatggcgccccagtccaaggcagggaagacctttggtctcaaagagcacttacaaaggtaattacatttacctccctccaaa 14498177  T
Q  410 ggcac 414  Q
    |||||    
T  14498178 ggcac 14498182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 314 - 481
Target Start/End: Complemental strand, 35618104 - 35617942
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||     ||||||||| | |||  |||||||    
T  35618104 ttttagggtgaggggatggtaccccagtccaaagcaaggaagaccttcgggctcaaagagcacttacaaag----ctacatttacatccct-gaaaggca 35618010  T
Q  414 ctagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagccttt 481  Q
    |||  || ||||||| |  |||||||| |||||||||||||||| ||||||||||||||||| |||||    
T  35618009 ctaacggagctcgaatctaggttctcttggattcaagacctgtcattttaccactagaccaaaccttt 35617942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 310 - 418
Target Start/End: Original strand, 33762539 - 33762647
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| | ||||||||||||||||||||||| ||| |||| |||    
T  33762539 aaaattttagggtgaggggatgatgccccagtccaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctccctctaaa 33762638  T
Q  410 ggcactagt 418  Q
    |||||||||    
T  33762639 ggcactagt 33762647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 397 - 488
Target Start/End: Complemental strand, 15034501 - 15034410
Alignment:
Q  397 acctacctccaaaggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagttc 488  Q
    |||| ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15034501 acctccctccaaaggcactagtagggctcgaacctgggttctttcggattcaagacctgtctttttaccactagaccaagcctttggagttc 15034410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 35371754 - 35371833
Alignment:
Q  320 ggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacc 399  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35371754 ggtgaggggatggtgccccagtccaaggcagggaagaacttcgggctcaaagagcacttacaaaggtaattacatttacc 35371833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 314 - 431
Target Start/End: Original strand, 44438553 - 44438670
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggca 413  Q
    ||||| || ||||||||||| ||||||| ||||||||||||||||||||   | ||||| |||||||||| |||||||||||||||| ||||||||||||    
T  44438553 ttttaaggcgaggggatggtaccccagttcaaggcagggaagaccttcgaatttaaagaacacttacaaaagtaattacatttacctccctccaaaggca 44438652  T
Q  414 ctagtggggctcgaaccc 431  Q
     ||| || ||||||||||    
T  44438653 ttagcggagctcgaaccc 44438670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 17015252 - 17015192
Alignment:
Q  311 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 371  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17015252 aaattttaggatgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaag 17015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 385
Target Start/End: Original strand, 17291828 - 17291897
Alignment:
Q  315 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaagg 385  Q
    ||||||||| |||||||   ||| ||||||||||||| ||||||||| || |||||||||| |||||||||    
T  17291828 tttagggtgcggggatgtcaccctagtccaaggcagg-aagaccttctggttcaaagagcatttacaaagg 17291897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 9e-79; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 9e-79
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 40156173 - 40155996
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40156173 aaaattttatggtgaggggatggtgccccagttcaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 40156074  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40156073 ggcactagcggggctcgaacccggattctctcggattcaagacctgtctttttaccactagaccaaacctttggagtt 40155996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 4e-75
Query Start/End: Original strand, 320 - 487
Target Start/End: Original strand, 6672802 - 6672969
Alignment:
Q  320 ggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcactagtg 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| |    
T  6672802 ggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgcgtacaaaggtaattacatttacctccctccaaaggcactagcg 6672901  T
Q  420 gggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6672902 gggcttgaacccgggttctctcggattcaagacctgtctttttaccactagaccaaacctttggagtt 6672969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 4e-75
Query Start/End: Original strand, 308 - 487
Target Start/End: Complemental strand, 44650528 - 44650349
Alignment:
Q  308 gtaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctcca 407  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  44650528 gtaaaattttagggtgaggggatggtgccccggtccaaggcagggaagatcttcggactcaaagagcacttacaaaggtaattacatttacctccctcca 44650429  T
Q  408 aaggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||||  || |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44650428 aaggcactaacggagctcgaaatcgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 44650349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 2754050 - 2754227
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||    
T  2754050 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaa 2754149  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||| ||||||| |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  2754150 ggcattagtgggactcgaatccgggttctctcggattcaagacctgtcattttaccactaaaccaagcctttgaagtt 2754227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 10745231 - 10745408
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||| |||| |||    
T  10745231 aaaattttagggtgaggggatggtgccccagtccaaggcagggaataccttcgggttcaaagagcacttacaaagataattacatttacctccctctaaa 10745330  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  10745331 ggcactagcggggctcggacccgggttctctcgaattcaagacctgtctttttaccactaaaccaagcctttggagtt 10745408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 17136520 - 17136343
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  17136520 aaaattttagggtgaggggatggtgccccagtccaaggcggggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 17136421  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||  ||||||||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||||||||||    
T  17136420 ggcactaacggggctcgaacccgggttctctcagattcaaaacctgtcattttatcactagaccaagcctttggagtt 17136343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 25987660 - 25987838
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaa-gaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaa 408  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  25987660 aaaattttagggtgaggggatggtgccccagaccaaggcagggaaagaccttcggactcaaagagcacttacaaaggtaattacatttacctccctccaa 25987759  T
Q  409 aggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |  | |||||||||||||||    
T  25987760 aggcactagcggggctcgaacccgagttctctcggattcaagacctgtctttttaccattgtatcaagcctttggagtt 25987838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 5039553 - 5039376
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||| ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||    
T  5039553 aaaattttagagtgaggggatggtgccctagtccaaggtagggaagatcttcgggctcaaagagcacttacaaaggtaattacgtttacctccctctaaa 5039454  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
     ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5039453 agcactagcggagctcgaacccgagttctctcggattcaagacctgtctttttaccactataccaagcctttggagtt 5039376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 36380131 - 36380308
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  36380131 aaaattttagggtgaggggatggtgcctcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaagggaattacatttacctccctccaaa 36380230  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| |||| || |||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  36380231 ggcactagcggggttcaaacccgagttttctcgaattcaagacctgtctgtttaccactagaccaagcctttgaagtt 36380308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 310 - 450
Target Start/End: Original strand, 45136969 - 45137109
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45136969 aaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 45137068  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaag 450  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  45137069 ggcactagcggggctcgaacccgggttctctcggattcaag 45137109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 2357075 - 2357251
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||| |||| |||||| |||| |||||||||||| ||||||||    
T  2357075 aaaattttagggtgaggggatggtgccccagtccaaggcatggaagaccttcgaactcaaa-agcatttacaatggtatttacatttacctccctccaaa 2357173  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    || ||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2357174 ggtactagtggaactcgaacccgggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 2357251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 310 - 461
Target Start/End: Original strand, 36836328 - 36836479
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36836328 aaaattttaaggtgaggggatggtgccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36836427  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttt 461  Q
    ||||| || ||| ||||||| |||||||||||||||||||||||||||||||    
T  36836428 ggcaccagcgggactcgaactcgggttctctcggattcaagacctgtctttt 36836479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 310 - 471
Target Start/End: Complemental strand, 21638030 - 21637869
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||    
T  21638030 aaaattttagggtgaggggatggtgccctagtccaaggcagagaagacctttgggctcaaagagcacttacaaaggtatttacatttacctccctccaaa 21637931  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactaga 471  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||| || |||||||||||||    
T  21637930 ggcactagcggggctcaaacccgggttctctcgaattcaagacctatcattttaccactaga 21637869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 26690287 - 26690110
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||  | |||||| ||||||||||||||||||||||||||| ||||||||    
T  26690287 aaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcgaacacaaagatcacttacaaaggtaattacatttacctccctccaaa 26690188  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
     ||||||| ||| ||||||||| | |||||||| ||| || |||||||||||||||||||||||||||||||||||||    
T  26690187 agcactagcgggactcgaacccagattctctcgaatttaaaacctgtctttttaccactagaccaagcctttggagtt 26690110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 7860145 - 7860322
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||| ||||||||| |||| ||||||||||||| ||| | ||||||||||||||| |||||||||| |||  ||||||||||| ||||||||    
T  7860145 aaaattttagggagaggggatgatgcctcagtccaaggcagagaaaatcttcgggctcaaagaacacttacaaatgtatgtacatttacctccctccaaa 7860244  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7860245 ggcactagcggggctcaaacccaggttctctcggattcaagacctgtcattttaccactagaccaagcctttggagtt 7860322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 313 - 493
Target Start/End: Original strand, 30372682 - 30372862
Alignment:
Q  313 attttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggc 412  Q
    ||||||||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||| || |||||||||||| | |||||||||    
T  30372682 attttagggtgagggtatggtaccccagttcaaggcatggaagaccttcgggctcaaagagcactaacaaagatatttacatttacctccttccaaaggc 30372781  T
Q  413 actagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagttccacaa 493  Q
    ||||| || |||||||||| || ||||||| ||||||||||| |||||||||||||||||||| |||||||||||| ||||    
T  30372782 actagcggagctcgaacccaggatctctcgaattcaagacctatctttttaccactagaccaaacctttggagttctacaa 30372862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 310 - 478
Target Start/End: Complemental strand, 3201014 - 3200847
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||| |||| ||||||||||||||| ||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||||| ||||||||    
T  3201014 aaaattttagggcgaggagatggtgccccagtctaaggcagagaagatcttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaa 3200915  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcc 478  Q
    |||||||| | |||||||| || ||||||||  ||||||||| ||||||||||||||| ||||||||||    
T  3200914 ggcactagcgaggctcgaatccaggttctcttagattcaagatctgtctttttaccac-agaccaagcc 3200847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 311 - 487
Target Start/End: Original strand, 13047156 - 13047324
Alignment:
Q  311 aaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaag 410  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||   |||||||||| |||||||| |||||||||    
T  13047156 aaattttagggtgaggggatggtgctccagtccaaggcagggaagatctttgggctcaaagagcactt---aaggtaattatatttacctccctccaaag 13047252  T
Q  411 gcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
      ||  | ||||||||||||||| |||||||| ||||||||||||||||||||||   ||||||||||||| |||||    
T  13047253 --acatgcggggctcgaacccggattctctcgaattcaagacctgtctttttacc---agaccaagcctttagagtt 13047324  T

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Target: chr2; HSP #19
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 310 - 451
Target Start/End: Complemental strand, 33066723 - 33066582
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||| |||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| || ||||||||||||  |||||||    
T  33066723 aaaattttaggatgaggggatggtgccccagtccaaggtagagaagaccttcaggctcaaagagcacttacaaagatatttacatttacctctctccaaa 33066624  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaaga 451  Q
    | ||||||||  |||||||||||| |||||||  ||||||||    
T  33066623 gacactagtgaagctcgaacccggattctctcaaattcaaga 33066582  T

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Target: chr2; HSP #20
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 310 - 417
Target Start/End: Original strand, 558438 - 558545
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||||||||  |||||||||||||||||||| |||||||||||||||| ||||||||    
T  558438 aaaattttagggtgaggggatggtgccccattccaaggaagggaagaccttctagctcaaagagcacttacaaaagtaattacatttacctccctccaaa 558537  T
Q  410 ggcactag 417  Q
    ||||||||    
T  558538 ggcactag 558545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 310 - 487
Target Start/End: Complemental strand, 21487282 - 21487106
Alignment:
Q  310 aaaattttagggtgagggg-atggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaa 408  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||  || |||||||||||| |||||||    
T  21487282 aaaattttaggatgagggggatggtgccccagtctaaggcagggaagactttcgggctcaaagagcacttacaaaaatatttacatttacctccctccaa 21487183  T
Q  409 aggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    ||  || ||||| |||| |||   |||  ||| |||||||||||||||| |||||||||| ||| || |||||||||||    
T  21487182 agataccagtggagctcaaacttaggt--tcttggattcaagacctgtcattttaccacttgactaaacctttggagtt 21487106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 314 - 475
Target Start/End: Original strand, 4553561 - 4553723
Alignment:
Q  314 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacct-acctccaaaggc 412  Q
    |||||| |||||||||||||||||||||| ||| ||| |||||||| ||| ||||||||| ||||||||| ||| ||| ||||||||  ||||||||  |    
T  4553561 ttttagagtgaggggatggtgccccagtctaagacagagaagacctccggactcaaagagtacttacaaatgtatttatatttacctctcctccaaaaac 4553660  T
Q  413 actagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaa 475  Q
    |||||  |  |||||||| |   ||||||| ||||||||| ||||||||||||| ||||||||    
T  4553661 actagctgaactcgaacctgaaatctctcgaattcaagacatgtctttttaccattagaccaa 4553723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 2098824 - 2098875
Alignment:
Q  309 taaaattttagggtgaggggatggtgccccagtccaaggcagggaagacctt 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2098824 taaaattttagggtgaggggatggtgccccagtccaaggcagggaagacctt 2098875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 410 - 487
Target Start/End: Original strand, 2098939 - 2099016
Alignment:
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| || | ||||||| ||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||    
T  2098939 ggcactagcggagttcgaacctgggttctctcgaattcaagacctatcattttaccaatagaccaagcctttggagtt 2099016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 365 - 446
Target Start/End: Complemental strand, 34362730 - 34362649
Alignment:
Q  365 ctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcactagtggggctcgaacccgggttctctcggatt 446  Q
    |||||||| |||||||||||||| ||| |||||| ||||| |||||| | ||| |||| | ||| ||||| | |||||||||    
T  34362730 ctcaaagatcacttacaaaggtatttatatttacataccttcaaaggtattagaggggtttgaatccgggatttctcggatt 34362649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 146; Significance: 2e-76; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 310 - 487
Target Start/End: Original strand, 107691 - 107867
Alignment:
Q  310 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaa 409  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  107691 aaaattttagg-tgaggggatggtgccccagtccaaggcagggtagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 107789  T
Q  410 ggcactagtggggctcgaacccgggttctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    |||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  107790 ggcactagcggggctcgaactcgggttctctcgaattcaagacctgtctttttaccactagaccaagtctttggagtt 107867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 78; Significance: 9e-36; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 336 - 487
Target Start/End: Original strand, 6994 - 7141
Alignment:
Q  336 cccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctacctccaaaggcactagtggggctcgaacccgggt 435  Q
    |||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||| | |||||||| ||||||| ||| ||||||||||| |    
T  6994 cccagtccaaggtagggaagaccttcggactcaaagaacacttgcaaaggtaattacatttacttccctccaaacgcactagcgggactcgaacccggat 7093  T
Q  436 tctctcggattcaagacctgtctttttaccactagaccaagcctttggagtt 487  Q
    ||||||   ||| || |||||||||||||||||| | |||||||||||||||    
T  7094 tctctc---ttcgagtcctgtctttttaccacta-aacaagcctttggagtt 7141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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