View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5839-Insertion-10 (Length: 262)

Name: NF5839-Insertion-10
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5839-Insertion-10
NF5839-Insertion-10
[»] chr2 (22 HSPs)
chr2 (9-262)||(9292632-9292888)
chr2 (19-254)||(9060297-9060535)
chr2 (35-256)||(10372589-10372816)
chr2 (40-256)||(9321698-9321920)
chr2 (19-198)||(9316793-9316975)
chr2 (19-198)||(8572701-8572879)
chr2 (38-216)||(10353898-10354076)
chr2 (19-149)||(12018113-12018243)
chr2 (40-150)||(9329418-9329528)
chr2 (13-150)||(9357935-9358072)
chr2 (19-158)||(10336622-10336761)
chr2 (37-158)||(9275334-9275455)
chr2 (35-152)||(10348620-10348737)
chr2 (19-159)||(9283373-9283513)
chr2 (26-149)||(12011799-12011922)
chr2 (26-158)||(12005371-12005503)
chr2 (78-198)||(14551091-14551210)
chr2 (19-158)||(7114844-7114983)
chr2 (70-149)||(9365415-9365494)
chr2 (40-149)||(7612716-7612825)
chr2 (38-145)||(11986743-11986850)
chr2 (47-149)||(8578752-8578854)
[»] chr3 (1 HSPs)
chr3 (19-257)||(37463225-37463472)
[»] scaffold0667 (1 HSPs)
scaffold0667 (13-178)||(5250-5415)
[»] chr4 (2 HSPs)
chr4 (38-216)||(26575632-26575810)
chr4 (77-158)||(561981-562062)
[»] chr8 (1 HSPs)
chr8 (22-178)||(41965924-41966080)
[»] chr1 (4 HSPs)
chr1 (56-182)||(29452587-29452713)
chr1 (56-198)||(29467061-29467203)
chr1 (56-182)||(29424001-29424127)
chr1 (77-198)||(29442616-29442737)
[»] chr5 (1 HSPs)
chr5 (38-148)||(36225571-36225681)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 9292888 - 9292632
Alignment:
Q  9 ggcggaccgccttccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatcc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292888 ggcggaccgccttccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatcc 9292789  T
Q  109 ctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaactccaaatcg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292788 ctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaactccaaatcg 9292689  T
Q  209 atgatga---tgatttctccaagtcgattattctactcaaccatcctttcaagaccg 262  Q
    |||||||   ||||||||||||||||||||||| |||||||||||||||||||||||    
T  9292688 atgatgatgatgatttctccaagtcgattattccactcaaccatcctttcaagaccg 9292632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 9060297 - 9060535
Alignment:
Q  19 cttccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgatt 118  Q
    |||||||| |||||| | |||||||||||||||||| |||| ||  ||||||||||| |||||||||||| ||||||||||||||||||| |||||||||    
T  9060297 cttccgccggaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgatt 9060396  T
Q  119 ctcacagcttcactaaccttcacctcaaa---aattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaactccaaatcgatgatga 215  Q
    |||||| ||||||||||||| ||||||||   ||| ||||||| ||||   |||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  9060397 ctcacaacttcactaacctttacctcaaaaataatcccctcaatcgatttataatccttcgacacaaatccgatctctaccaactccaagtcgatgatga 9060496  T
Q  216 tgatttctccaagtcgattattctactcaaccatccttt 254  Q
    ||||||||| || || || || |  ||||||||||||||    
T  9060497 tgatttctctaaatcaatgataccgctcaaccatccttt 9060535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 35 - 256
Target Start/End: Complemental strand, 10372816 - 10372589
Alignment:
Q  35 tcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaa 134  Q
    |||||||| ||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||| |||||||  |||||||||| ||||  ||||  ||    
T  10372816 tcgccgaagtcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaa 10372717  T
Q  135 ccttcacctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaactccaaatcg------atgatgatgatttctccaag 228  Q
    |||||||||| ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||      |||||||||||||||| ||     
T  10372716 ccttcacctccaaaattccctcaatcgatccttaatccttcaacgcaaattcgatctctaccaactccaaatcgatgacgatgatgatgatttctctaaa 10372617  T
Q  229 tcgattattctactcaaccatcctttca 256  Q
    ||||  |||| |||||||||||||||||    
T  10372616 tcgaggattccactcaaccatcctttca 10372589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 40 - 256
Target Start/End: Complemental strand, 9321920 - 9321698
Alignment:
Q  40 gaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttc 139  Q
    |||||| |||||||| |||| |||||||||||||||  ||||||||||| ||| ||||||||||||||| ||||||||||||||  |||||  |||||||    
T  9321920 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttc 9321821  T
Q  140 acctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaactccaaatcgatg---atgatgatttctccaagtc---gat 233  Q
    | ||||||||||||||||  |||||||||||| ||| |||||||||||||||||||||||||||||||||||   ||||||||||||| || ||   |||    
T  9321820 atctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgat 9321721  T
Q  234 tattctactcaaccatcctttca 256  Q
     |||| |||||||||||||||||    
T  9321720 gattccactcaaccatcctttca 9321698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 9316975 - 9316793
Alignment:
Q  19 cttccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgatt 118  Q
    |||||||| |||||| |||||||||||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||  |||| ||||    
T  9316975 cttccgccggaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatagatt 9316876  T
Q  119 ctcacagcttcactaaccttcacctcaaa---aattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaa 198  Q
    |||||| |||||  |||||||||||||||   ||||||||||| ||||||||||||||||   |||||| ||| |||||||||    
T  9316875 ctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatccttcattacaaatccgaactctaccaa 9316793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 8572701 - 8572879
Alignment:
Q  19 cttccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgatt 118  Q
    |||||| | ||||||||| | ||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||  |||||||||    
T  8572701 cttccgtcggaaatagtcactgaaatcttctcccgcataccagtaaa-tcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgatt 8572799  T
Q  119 ctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaa 198  Q
    | |||| |||||| |||||||||||||||||||||||||| || ||||||||| |||||| ||| | |||| ||||||||    
T  8572800 cccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcattcgacgcaactacgatatctaccaa 8572879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 10354076 - 10353898
Alignment:
Q  38 ccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaacct 137  Q
    |||||||| | |||||| |||| |||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||  |||  ||||  |||||    
T  10354076 ccgaaatcctttcccgcttaccggtaatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaacct 10353977  T
Q  138 tcacctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaactccaaatcgatgatgat 216  Q
    |||||||| |||||||| ||| | ||||||||| ||||||  |||||||||| |||||||| |  ||||||||||||||    
T  10353976 tcacctcagaaattcccccaatcaatccttaattcttcgattcaaattcgatatctaccaaattaaaatcgatgatgat 10353898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 12018113 - 12018243
Alignment:
Q  19 cttccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgatt 118  Q
    |||||| |||| ||| |||||||||||||||||||| |||||||||||||||||||  ||||||| |||| ||||||||||||||||||| |||||||||    
T  12018113 cttccgtcagacatactcgccgaaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgatt 12018212  T
Q  119 ctcacagcttcactaaccttcacctcaaaaa 149  Q
    |||||| |||||| || ||||| ||||||||    
T  12018213 ctcacaacttcaccaatcttcaactcaaaaa 12018243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 9329528 - 9329418
Alignment:
Q  40 gaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttc 139  Q
    |||||| |||||||| |||| ||||||||||||||| ||||||| |||| ||||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  9329528 gaaatcctctcccgcttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttc 9329429  T
Q  140 acctcaaaaat 150  Q
    |||||||||||    
T  9329428 acctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 9358072 - 9357935
Alignment:
Q  13 gaccgccttccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaa 112  Q
    |||||||||||||| |||||| ||||| |||| || | |||| |||||||||||||||||||| | ||  |||||| ||||||||||||||||||| |||    
T  9358072 gaccgccttccgccggaaatactcgccaaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaa 9357973  T
Q  113 tcgattctcacagcttcactaaccttcacctcaaaaat 150  Q
    |||||||||||| |||||  ||||||||||||||||||    
T  9357972 tcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 10336761 - 10336622
Alignment:
Q  19 cttccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgatt 118  Q
    |||||||| |||||  || ||||||||||||||||  |||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||    
T  10336761 cttccgccggaaattctctccgaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 10336662  T
Q  119 ctcacagcttcactaaccttcacctcaaaaattccctcaa 158  Q
    ||||||  ||||  |||||||||||  |||||||||||||    
T  10336661 ctcacaaattcatcaaccttcaccttcaaaattccctcaa 10336622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 9275455 - 9275334
Alignment:
Q  37 gccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaacc 136  Q
    |||||||||||||||||  |||||||| ||||||||||| ||||||||||||| |||||||||||||||||  | || ||||| |||| |||||  ||||    
T  9275455 gccgaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaacc 9275356  T
Q  137 ttcacctcaaaaattccctcaa 158  Q
    |||| |||||||||||||||||    
T  9275355 ttcatctcaaaaattccctcaa 9275334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 10348737 - 10348620
Alignment:
Q  35 tcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaa 134  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||| | ||  ||||  ||    
T  10348737 tcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaa 10348638  T
Q  135 ccttcacctcaaaaattc 152  Q
    ||||||||| ||||||||    
T  10348637 ccttcacctaaaaaattc 10348620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 9283373 - 9283513
Alignment:
Q  19 cttccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgatt 118  Q
    |||||||| || ||| | ||||||||||||||| || ||||||| |||||||| ||| |||||||||||| ||| |||||||||  ||||||||| ||||    
T  9283373 cttccgccggacatacttgccgaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttctaaatcacttcgatccctaatagatt 9283472  T
Q  119 ctcacagcttcactaaccttcacctcaaaaattccctcaac 159  Q
    ||||||  ||||  |||||||||||||||| ||||||||||    
T  9283473 ctcacaaattcatcaaccttcacctcaaaagttccctcaac 9283513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 12011799 - 12011922
Alignment:
Q  26 cagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacag 125  Q
    |||||||| || ||||||||||||||||| |||    | ||||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||     
T  12011799 cagaaatactcaccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaa 12011898  T
Q  126 cttcactaaccttcacctcaaaaa 149  Q
    |||||| || ||||||||||||||    
T  12011899 cttcaccaatcttcacctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 158
Target Start/End: Original strand, 12005371 - 12005503
Alignment:
Q  26 cagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacag 125  Q
    |||||||| || ||||||||||||||||| ||||   | ||||||||||| ||||||| |||| |||| |||| ||||||||| |||||||||||||||     
T  12005371 cagaaatactcaccgaaatcttctcccgcttacctccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaa 12005470  T
Q  126 cttcactaaccttcacctcaaaaattccctcaa 158  Q
    |||||| |||||||| || |||||||| |||||    
T  12005471 cttcaccaaccttcatctaaaaaattctctcaa 12005503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 14551210 - 14551091
Alignment:
Q  78 attccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcga 177  Q
    ||||||||||| ||||||||||||| |||||||||||||||| |||| |||||  || |||||||| ||||||||||||||  | |||||||||||||||    
T  14551210 attccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct-aaaaattccctcaattgttccttaatccttcga 14551112  T
Q  178 cacaaattcgatctctaccaa 198  Q
    ||||| | | |||||||||||    
T  14551111 cacaagtccaatctctaccaa 14551091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 7114844 - 7114983
Alignment:
Q  19 cttccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgatt 118  Q
    |||||||| |||||| |  ||||||||||||| ||| ||||||||  |||||||||  |||||||||||| ||||||||||||||||||| |||||||||    
T  7114844 cttccgccggaaatactatccgaaatcttctctcgcctaccagtacgatcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgatt 7114943  T
Q  119 ctcacagcttcactaaccttcacctcaaaaattccctcaa 158  Q
    | ||||  ||||  |||||||| || ||||||||| ||||    
T  7114944 cccacaaattcatcaaccttcatcttaaaaattccttcaa 7114983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 9365494 - 9365415
Alignment:
Q  70 cttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaa 149  Q
    |||||| ||||||||||||  |||||||||||||||||| ||||||||||||||| |||||| ||||| || ||||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaa 9365415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 7612825 - 7612716
Alignment:
Q  40 gaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttc 139  Q
    |||||| |||| ||| |||| ||| || | || ||| |||||||||||||||| ||||| ||||||||| |||| ||||| |||| |||||| |||||||    
T  7612825 gaaatcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttc 7612726  T
Q  140 acctcaaaaa 149  Q
    ||||||||||    
T  7612725 acctcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 11986743 - 11986850
Alignment:
Q  38 ccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaacct 137  Q
    ||||||||||||||||| |||    | ||||||||||| ||||||| |||| |||| |||| ||||||||| |||| |||||||||| |||||| || ||    
T  11986743 ccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatct 11986842  T
Q  138 tcacctca 145  Q
    ||||||||    
T  11986843 tcacctca 11986850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 8578752 - 8578854
Alignment:
Q  47 tctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaa 146  Q
    |||||||| |||| ||| |||| |||||| |||||||||||||||| |||||||||  |||| | || ||||| |||| |||||| || | | |||||||    
T  8578752 tctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattcccacaccttcaccaaacattacctcaa 8578851  T
Q  147 aaa 149  Q
    |||    
T  8578852 aaa 8578854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 37463472 - 37463225
Alignment:
Q  19 cttccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgatt 118  Q
    |||||||| |||||| ||||||||||| |||||||  |||||||| ||||||||||| |||||||||||| ||||||||||||||||||  |||||||||    
T  37463472 cttccgccggaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgatt 37463373  T
Q  119 ctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaactccaaatcgatgatgatga 218  Q
    |||||| |||||  |||||||| ||||||||| ||||||| | |||| ||||| ||||| |||| | |||| ||||||||||||||||||||||| | ||    
T  37463372 ctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatcattcgaaacaactccgatatctaccaactccaaatcgatgataacga 37463273  T
Q  219 tttctc---------caagtcgattattctactcaaccatcctttcaa 257  Q
    ||||||         ||| |||||||||| ||||||||||||||||||    
T  37463272 tttctctaatcgaatcaattcgattattccactcaaccatcctttcaa 37463225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 5415 - 5250
Alignment:
Q  13 gaccgccttccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaa 112  Q
    |||||||||||||| || | | |||| ||||||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||||||| |||    
T  5415 gaccgccttccgccggacacactcgcagaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataa 5316  T
Q  113 tcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcgac 178  Q
    |||||||||||| |||||  |||||||||| |||||||||||||||  ||||||| ||||||||||    
T  5315 tcgattctcacaacttcatcaaccttcaccgcaaaaattccctcaatagatccttcatccttcgac 5250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 26575810 - 26575632
Alignment:
Q  38 ccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaacct 137  Q
    ||||||||||||||||  |||| |||| |||||||||| |||||||||||| ||||||||||||||||| | ||||||||||  |||  ||||  |||||    
T  26575810 ccgaaatcttctcccgtttaccggtaatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaacct 26575711  T
Q  138 tcacctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaactccaaatcgatgatgat 216  Q
    |||||||| |||||||| ||| ||||||||||||||||||  |||||||||| ||||||||||  ||||| ||||||||    
T  26575710 tcacctcagaaattcccccaatcgatccttaatccttcgattcaaattcgatatctaccaacttgaaatcaatgatgat 26575632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 562062 - 561981
Alignment:
Q  77 gattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaa 158  Q
    ||||||||| || ||||||||  ||||||||| |||||||||| |||| |||||||||||||||||||||||| ||||||||    
T  562062 gattccgattaagttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaactccctcaa 561981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 41965924 - 41966080
Alignment:
Q  22 ccgccagaaatagtcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctc 121  Q
    |||||||||||| |||| |||||||||||||   |||| ||||||||| ||||| ||||||||||||  || |||||||||  |||| |||||||||| |    
T  41965924 ccgccagaaatactcgctgaaatcttctccctattaccggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcgattccc 41966023  T
Q  122 acagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcgac 178  Q
    ||| |||||  ||||||||||||| ||| |||||||| |||||||||||||||||||    
T  41966024 acaacttcatcaaccttcacctcagaaaatccctcaatcgatccttaatccttcgac 41966080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 29452587 - 29452713
Alignment:
Q  56 taccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccct 155  Q
    |||| ||| |||| || ||| ||||||| ||||  |||||||||||| ||||||||||||||||||||| |||||  || ||||||||| ||||||||||    
T  29452587 taccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccct 29452686  T
Q  156 caaccgatccttaatccttcgacacaa 182  Q
    ||| || ||||||||||||||||||||    
T  29452687 caatcgttccttaatccttcgacacaa 29452713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 29467061 - 29467203
Alignment:
Q  56 taccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccct 155  Q
    |||| ||| |||| || ||| ||||||| ||||  |||||||||||| |||||||||||||||| |||| |||||  || |||||||||  |||||||||    
T  29467061 taccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccct 29467160  T
Q  156 caaccgatccttaatccttcgacacaaattcgatctctaccaa 198  Q
    ||| || | |||||||||||||||||| | |||| ||||||||    
T  29467161 caatcgtttcttaatccttcgacacaactccgatttctaccaa 29467203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 29424127 - 29424001
Alignment:
Q  56 taccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccct 155  Q
    |||| ||| |||| || ||| ||||||| ||||  |||||||||||| |||| ||||||||||| ||||||||||  || ||||||||| | |||||| |    
T  29424127 taccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccataattcctt 29424028  T
Q  156 caaccgatccttaatccttcgacacaa 182  Q
    ||| || ||||||||||||||||||||    
T  29424027 caatcgttccttaatccttcgacacaa 29424001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 29442616 - 29442737
Alignment:
Q  77 gattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcg 176  Q
    ||||||| ||||  || ||||||||| |||||||||||||||| || | |||||  || ||||||||| |||||| |||||| || ||||||||||||||    
T  29442616 gattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatccttcg 29442715  T
Q  177 acacaaattcgatctctaccaa 198  Q
    |||||| || ||| ||||||||    
T  29442716 acacaactttgatttctaccaa 29442737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 36225681 - 36225571
Alignment:
Q  38 ccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaacct 137  Q
    |||||||| |||||||| ||| |||  |||| || ||| |||||||||||| ||||||||||||||||||  |||||||||| |||| ||||||||| ||    
T  36225681 ccgaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatct 36225582  T
Q  138 tcacctcaaaa 148  Q
    |||||||||||    
T  36225581 tcacctcaaaa 36225571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University