View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5839-Insertion-11 (Length: 204)
Name: NF5839-Insertion-11
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5839-Insertion-11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 28830436 - 28830354
Alignment:
| Q |
122 |
gagcattattaaggttgttcgaaacataattcttcatcatcatgcatctaccttagaaatccttaagcaacttacgaacctgt |
204 |
Q |
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| T |
28830436 |
gagcattattaaggttgttcgaaacataattcttcatcatcatgcatctaccttagaaatccttaagcaacttacgaacctgt |
28830354 |
T |
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Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 28830549 - 28830500
Alignment:
| Q |
9 |
aattcttggtacagaattcaatcacaatcggtaacacactattggaatca |
58 |
Q |
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| T |
28830549 |
aattcttggtacagaattcaatcacaatcggtaacacactattggaatca |
28830500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 46553123 - 46553158
Alignment:
| Q |
23 |
aattcaatcacaatcggtaacacactattggaatca |
58 |
Q |
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| T |
46553123 |
aattcaatcacagtcggtaacacactattggaatca |
46553158 |
T |
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