View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5839-Insertion-2 (Length: 1030)

Name: NF5839-Insertion-2
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5839-Insertion-2
NF5839-Insertion-2
[»] chr8 (6 HSPs)
chr8 (9-971)||(37377132-37378098)
chr8 (55-695)||(37384827-37385465)
chr8 (89-348)||(37408313-37408581)
chr8 (84-334)||(37362019-37362269)
chr8 (84-334)||(37365792-37366042)
chr8 (22-59)||(37385478-37385515)
[»] chr2 (4 HSPs)
chr2 (97-365)||(41227435-41227703)
chr2 (456-551)||(41227814-41227909)
chr2 (643-740)||(2419922-2420019)
chr2 (650-691)||(17500908-17500949)
[»] chr1 (2 HSPs)
chr1 (645-694)||(32462588-32462637)
chr1 (650-695)||(29692320-29692365)
[»] chr7 (1 HSPs)
chr7 (650-695)||(25730076-25730121)
[»] chr5 (2 HSPs)
chr5 (650-695)||(13595833-13595878)
chr5 (650-695)||(22916301-22916346)


Alignment Details
Target: chr8 (Bit Score: 785; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 785; E-Value: 0
Query Start/End: Original strand, 9 - 971
Target Start/End: Complemental strand, 37378098 - 37377132
Alignment:
Q  9 ctcacttctcagttctcaaacaaagctcaagaatgaggttcaaaattttcctttgtaataatatatgaataatttgaagccaaactacttgcaatgtaga 108  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37378098 ctcacttctcaattctcaaacaaagctcaacaatgaggttcaaaattttcctttgtaataatatatgaataatttgaagccaaactacttgcaatgtaga 37377999  T
Q  109 acaaatagtgaacatccatgaacttccaaatccatgaatatcgtcccttgcgttgttgcgacgttctttccactccacacttctttaccttgacagaaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37377998 acaaatagtgaacatccatgaacttccaaatccatgaatatcgtcccttgcgttgttgcaacgttctttccactccacacttctttaccttgacagaaat 37377899  T
Q  209 tgattggtctgccagggaaaaccttagccaaatctgatgtctttgcgtatactggtgtgttctgttcatttagattgaagaaagccaaatacacttctcc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37377898 tgattggtctgccagggaaaaccttagccaaatctgatgtctttgcgtatactggtgtcttctgttcatttagattgaagaaagccaaatacacttctcc 37377799  T
Q  309 gtttctccccgttgcaatccaagagcgaatcccacccgaaactacatttgctgcacaaatgtccgatttccattatgagtaataaaaccaaggaagatta 408  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37377798 gtttctccccgttgcaatccaagagcgaatcccacccgatactacatttgctgcacaaatgtccgatttccattatgagtaataaaaccaaggaagatta 37377699  T
Q  409 tacaactcaaaaaataagtcagttctaaaataa-ggacgtatatgtactaaaattcaccttctatatactttactgttacacacagtcctgagtaactat 507  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37377698 tacaactaaaaaaataagtcagttctaaaataagggacgtatatgtactaaaattcaccttctaaatactttactgttacacacagtcctgagtaactat 37377599  T
Q  508 ttaccatggtcccattggagtgtagctcccaaatctgttaaagacaaaattggtcatctttccagttgaacccgcaaatctcaataataaaaataatgaa 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37377598 ttaccatggtcccattggagtgtagctcccaaatctgttaaagacaaaattgatcatctttccagttgaacccgcaaatctcaataataaaaataatgaa 37377499  T
Q  608 ttggccaaggcctattttgttgcctagctagggataaacaagtatataacctttaaaattgtggtgcaaaatttgagaaaatgactatgctgatagattt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37377498 ttggccaaggcctattttgttgcctagctagggataaacaagtatataacctttaaaattgtggtgcaaaatttgagaaaatgactatgctgatagattt 37377399  T
Q  708 tttcaatataaatgactaaattgctatttcacatgagggactatgattgacctaccttcaaaatttc-agaactaaaatgcatatttactcgatatacat 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  37377398 tttcaatataaatgactaaattgctatttcacatgagggactatgattgacctaccttcaaaatttcaagaactaaaatgcatatttactcgatata-at 37377300  T
Q  807 gtgaatgaaagtttgatgcatatttactcgatacacgtgtagat-agtttgattatcctgaaaataaggatcatatacaggattt---cgctaaagatt- 901  Q
    ||||||||||||||||  |        ||  || |||||||||| ||||||||||||||||||||||||||||||||||||||||     |||||||||     
T  37377299 gtgaatgaaagtttgacac------tgtcagtatacgtgtagataagtttgattatcctgaaaataaggatcatatacaggattttcaacctaaagatta 37377206  T
Q  902 agagctacatgcagcacttgtacatg-aatat-gactac-atatactgaatttgagtcc-atctgcaaggagaa 971  Q
    |||||||||||||||||||||||||| ||||| |||||| ||||||   |||||||||| ||||||||||||||    
T  37377205 agagctacatgcagcacttgtacatgaaatatggactacaatatacctgatttgagtccaatctgcaaggagaa 37377132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 55 - 695
Target Start/End: Complemental strand, 37385465 - 37384827
Alignment:
Q  55 tttcctttgtaataatatatgaataat-ttgaagccaaactacttgcaatgtagaacaaatagtgaacatccatgaacttccaaatccatgaatatcgtc 153  Q
    ||||||||||||||||||||||||| | ||||  |||||||| |||||||||||||||||||||| ||||||||||||||||| ||| |   ||||||||    
T  37385465 tttcctttgtaataatatatgaatagtgttgagaccaaactagttgcaatgtagaacaaatagtgcacatccatgaacttccacatcaaccgatatcgtc 37385366  T
Q  154 ccttgcgttgttgcgacgttctttccactccacacttctttaccttgacagaaattgattggtctgccagggaaaaccttagccaaatctgatgtctttg 253  Q
    ||||| |||||| |||||||||||||||||||||||||| ||||||||||| | |||||  |||||||||||||||||||| ||||||||||||||||||    
T  37385365 ccttgagttgttacgacgttctttccactccacacttctgtaccttgacaggacttgatgcgtctgccagggaaaaccttacccaaatctgatgtctttg 37385266  T
Q  254 cgtatactggtgtgttctgttcatttagattgaagaaagccaaatacacttctccgtttctccccgttgcaatccaagagcgaatcccacccgaaactac 353  Q
    | ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  37385265 catatactggtgtcttctgttcatttagattgaagaaagctaaatacacttctccgtttctccccgttgcaatccaagaacgaatcccacccgaaacaac 37385166  T
Q  354 atttgctgcacaaatgtccgatttccattatgagtaataaaaccaaggaagattatacaactcaaaaaataagtcagttctaaaat-aaggacgtatatg 452  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| || ||| | |||| ||||||    
T  37385165 atttgctgcacaaatgtccaatttccattatgagtaataaaaccaaggaagattatacaactcaaaaaataattaagttttagaatgagggacatatatg 37385066  T
Q  453 tactaaaattcaccttctatatactttactgttacacacagtcctgagtaactatttaccatggtcccattggagtgtagctcccaaatctgttaaagac 552  Q
    ||| ||||||||||||||||||||||||||||| |||| || ||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| ||    
T  37385065 tacgaaaattcaccttctatatactttactgttgcacaaagacctgagtaactgtttaccagggtcccattggagtttagctcccaaatctgttaaaaac 37384966  T
Q  553 aaaattggtcatctttccagttgaacccgcaaatctcaataataaaaataatgaattggccaaggcctattttg--ttgc--ctagctagggataaacaa 648  Q
    | ||||| ||||| ||||||||||| || ||||| ||| ||||| |       ||||||||||||| |||||||  | ||  ||||||||||||||||||    
T  37384965 agaattgatcatc-ttccagttgaatccacaaatatcagtaataca-------aattggccaaggcatattttgtctagctactagctagggataaacaa 37384874  T
Q  649 gtatataacctttaaaattgtggtgcaaaatttgagaaaatgactat 695  Q
      ||||||||||||||| |||||||||||||||||||||| ||||||    
T  37384873 acatataacctttaaaaatgtggtgcaaaatttgagaaaaggactat 37384827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 89 - 348
Target Start/End: Original strand, 37408313 - 37408581
Alignment:
Q  89 caaactacttgcaatgt-agaacaaatagtgaacatccatgaacttccaaatccatgaatatcgtcccttgcgttgttgcgacgttctttc--------c 179  Q
    ||||||| ||||||| | |||| || ||||| ||| |||||||||||||  ||||   ||||| | |||||||||||||||||||||||||        |    
T  37408313 caaactatttgcaatattagaataagtagtgcacaaccatgaacttccacgtccactgatatcattccttgcgttgttgcgacgttctttctactgatcc 37408412  T
Q  180 actccacacttctttaccttgacagaaattgattggtctgccagggaaaaccttagccaaatctgatgtctttgcgtatactggtgtgttctgttcattt 279  Q
    ||||||||||||||||||||||||| || ||||  || ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  37408413 actccacacttctttaccttgacaggaactgatgtgtatgccagggaaaaccttagctaaatctgatgtctttgcatatactggtgtcttctgttcattt 37408512  T
Q  280 agattgaagaaagccaaatacacttctccgtttctccccgttgcaatccaagagcgaatcccacccgaa 348  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||    
T  37408513 agattgaagaaagccaaatacacttctccttttcttcccgttgcaatccaagagcgaatgccatccgaa 37408581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 84 - 334
Target Start/End: Complemental strand, 37362269 - 37362019
Alignment:
Q  84 gaagccaaactacttgcaatgtagaacaaatagtgaacatccatgaacttccaaatccatgaatatcgtcccttgcgttgttgcgacgttctttccactc 183  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||  |||  ||| |  |||| |  |||| | ||||||| || | ||||||||||    
T  37362269 gaagccaaactacttgcaatttagaacaaatagtgcacatccatgaacacccacgtccgttgatattgaacctttctttgttgcaacatactttccactc 37362170  T
Q  184 cacacttctttaccttgacagaaattgattggtctgccagggaaaaccttagccaaatctgatgtctttgcgtatactggtgtgttctgttcatttagat 283  Q
    || | ||| | ||||| |||| ||  |||  || ||||||  ||| |||||| |||||||||| | | ||| |||| |||||| || |||||| ||||||    
T  37362169 cataattcctgacctttacaggaacggatgcgtttgccagtaaaagccttagacaaatctgatctatgtgcatatattggtgtcttttgttcacttagat 37362070  T
Q  284 tgaagaaagccaaatacacttctccgtttctccccgttgcaatccaagagc 334  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  37362069 tgaagaaagccaaatacacttctccttttcttcccgtcgcaatccaagagc 37362019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 84 - 334
Target Start/End: Original strand, 37365792 - 37366042
Alignment:
Q  84 gaagccaaactacttgcaatgtagaacaaatagtgaacatccatgaacttccaaatccatgaatatcgtcccttgcgttgttgcgacgttctttccactc 183  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||  |||  ||| |  |||| |  |||| | ||||||| || | ||||||||||    
T  37365792 gaagccaaactacttgcaatttagaacaaatagtgcacatccatgaacacccacgtccgttgatattgaacctttctttgttgcaacatactttccactc 37365891  T
Q  184 cacacttctttaccttgacagaaattgattggtctgccagggaaaaccttagccaaatctgatgtctttgcgtatactggtgtgttctgttcatttagat 283  Q
    || | ||| | ||||| |||| ||  |||  || ||||||  ||| |||||| ||||| |||| | | ||| |||| |||||| || |||||| ||||||    
T  37365892 cataattcctgacctttacaggaacggatgcgtttgccagtaaaagccttagacaaatttgatctatgtgcatatattggtgtcttttgttcacttagat 37365991  T
Q  284 tgaagaaagccaaatacacttctccgtttctccccgttgcaatccaagagc 334  Q
    ||||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  37365992 tgaagaaagccaaatacacttctccttttcttcccgtcgcaatccaagagc 37366042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 37385515 - 37385478
Alignment:
Q  22 tctcaaacaaagctcaagaatgaggttcaaaattttcc 59  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  37385515 tctcaaaaaaagctcaacaatgaggttcaaaattttcc 37385478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 8e-64; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 97 - 365
Target Start/End: Original strand, 41227435 - 41227703
Alignment:
Q  97 ttgcaatgtagaacaaatagtgaacatccatgaacttccaaatccatgaatatcgtcccttgcgttgttgcgacgttctttccactccacacttctttac 196  Q
    ||||||| |||||||| ||| |  ||||||||||||||||  |||||  |||| ||||||||||||||| | |||||||| ||||||||||||||||| |    
T  41227435 ttgcaatatagaacaactagcgcgcatccatgaacttccacgtccattgatattgtcccttgcgttgttacaacgttcttcccactccacacttctttgc 41227534  T
Q  197 cttgacagaaattgattggtctgccagggaaaaccttagccaaatctgatgtctttgcgtatactggtgtgttctgttcatttagattgaagaaagccaa 296  Q
    |||||||| |||||||  |||||||||| |||||||| ||||||| |||  | ||||| |||| |||||| ||||||||||||||||||||||||||||     
T  41227535 cttgacaggaattgatgcgtctgccaggtaaaaccttcgccaaatatgacatatttgcatatattggtgtcttctgttcatttagattgaagaaagccat 41227634  T
Q  297 atacacttctccgtttctccccgttgcaatccaagagcgaatcccacccgaaactacatttgctgcaca 365  Q
    ||| |||||||| ||||| || |||||||||||||||||||| ||||||||  | ||||| ||||||||    
T  41227635 atatacttctccttttcttcctgttgcaatccaagagcgaatgccacccgattcaacattagctgcaca 41227703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 456 - 551
Target Start/End: Original strand, 41227814 - 41227909
Alignment:
Q  456 taaaattcaccttctatatactttactgttacacacagtcctgagtaactatttaccatggtcccattggagtgtagctcccaaatctgttaaaga 551  Q
    |||||||||||||  |||||||| |||||| |||| || || |||||||||||||||| ||| |||||||||| |||||||||||||||| |||||    
T  41227814 taaaattcaccttggatatacttcactgttgcacaaagaccagagtaactatttaccagggttccattggagtttagctcccaaatctgtcaaaga 41227909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 643 - 740
Target Start/End: Original strand, 2419922 - 2420019
Alignment:
Q  643 aaacaagtatataacctttaaaattgtggtgcaaaatttgagaaaatgactatgctgatagat-tttttcaatataaatgactaaattgctatttcaca 740  Q
    |||||||| || |||||||||| |||||||||||||||||| |||| |||||   |||| ||| ||||| ||| |||  ||||||||||||||||||||    
T  2419922 aaacaagtgtaaaacctttaaa-ttgtggtgcaaaatttgaaaaaaagactaaattgattgatatttttaaatttaagagactaaattgctatttcaca 2420019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 650 - 691
Target Start/End: Complemental strand, 17500949 - 17500908
Alignment:
Q  650 tatataacctttaaaattgtggtgcaaaatttgagaaaatga 691  Q
    |||||||| |||||||||||||| |||||||| |||||||||    
T  17500949 tatataacatttaaaattgtggtacaaaatttaagaaaatga 17500908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 645 - 694
Target Start/End: Complemental strand, 32462637 - 32462588
Alignment:
Q  645 acaagtatataacctttaaaattgtggtgcaaaatttgagaaaatgacta 694  Q
    ||||||||| |||||||||||||||||||  |||||||| ||||||||||    
T  32462637 acaagtatagaacctttaaaattgtggtgttaaatttgaaaaaatgacta 32462588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 650 - 695
Target Start/End: Complemental strand, 29692365 - 29692320
Alignment:
Q  650 tatataacctttaaaattgtggtgcaaaatttgagaaaatgactat 695  Q
    |||| ||| |||||||||||||||  ||||||||||||||||||||    
T  29692365 tatagaacatttaaaattgtggtgttaaatttgagaaaatgactat 29692320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 650 - 695
Target Start/End: Complemental strand, 25730121 - 25730076
Alignment:
Q  650 tatataacctttaaaattgtggtgcaaaatttgagaaaatgactat 695  Q
    |||| ||| |||||||||||||||  ||||||||||||||||||||    
T  25730121 tatagaacatttaaaattgtggtgttaaatttgagaaaatgactat 25730076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 650 - 695
Target Start/End: Complemental strand, 13595878 - 13595833
Alignment:
Q  650 tatataacctttaaaattgtggtgcaaaatttgagaaaatgactat 695  Q
    |||| ||| |||||||||||||||  ||||||||||||||||||||    
T  13595878 tatagaacatttaaaattgtggtgttaaatttgagaaaatgactat 13595833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 650 - 695
Target Start/End: Complemental strand, 22916346 - 22916301
Alignment:
Q  650 tatataacctttaaaattgtggtgcaaaatttgagaaaatgactat 695  Q
    |||| ||| |||||||||||||||  ||||||||||||||||||||    
T  22916346 tatagaacatttaaaattgtggtgttaaatttgagaaaatgactat 22916301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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