View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5839-Insertion-9 (Length: 295)

Name: NF5839-Insertion-9
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5839-Insertion-9
NF5839-Insertion-9
[»] chr7 (1 HSPs)
chr7 (8-295)||(27064096-27064383)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 295
Target Start/End: Original strand, 27064096 - 27064383
Alignment:
Q  8 agatgggccactgaaaattttcccaaaattgaatacatgtaagtaatcctgacccacgcaacaaacttccaatcctgaaagcttctctgtgtgctccttt 107  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27064096 agatgggccactgaaaattttcccaaaattgaatgcatgtaagtaatcctgacccacgcaacaaacttccaatcctgaaagcttctctgtgtgctccttt 27064195  T
Q  108 tccctttctcttcagaacaaatttttaaccaaaataacatagatagctgaatacaataatccaataaactttcaagaaaatagcatctttaccactaata 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27064196 tccctttctcttcagaacaaatttttaaccaaaataacatagatagctgaatacaataatccaataaactttcaagaaaatagcatctttaccactaata 27064295  T
Q  208 aaagtatactgctttttactttgcatctgagcacataaccaattggtctatctgagtcagtttttctttgttagtgttagtgtctgtg 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27064296 aaagtatactgctttttactttgcatctgagcacataaccaattggtctatctgagtcagtttttctttgttagtgttagtgtctgtg 27064383  T

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