View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5839_high_1 (Length: 1051)

Name: NF5839_high_1
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5839_high_1
NF5839_high_1
[»] chr6 (6 HSPs)
chr6 (188-1036)||(17361847-17362682)
chr6 (734-1000)||(17368172-17368438)
chr6 (8-95)||(17362734-17362821)
chr6 (734-801)||(19119068-19119135)
chr6 (734-801)||(19126362-19126429)
chr6 (588-633)||(17368554-17368599)
[»] chr3 (5 HSPs)
chr3 (822-945)||(23231049-23231172)
chr3 (742-935)||(23234853-23235045)
chr3 (831-947)||(23239573-23239689)
chr3 (739-801)||(23197017-23197079)
chr3 (740-801)||(7398164-7398225)
[»] chr2 (2 HSPs)
chr2 (737-806)||(7156174-7156243)
chr2 (734-812)||(33038154-33038232)


Alignment Details
Target: chr6 (Bit Score: 706; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 188 - 1036
Target Start/End: Complemental strand, 17362682 - 17361847
Alignment:
Q  188 aacacaatagatatgaacataacaggcataaacacttctgatcaacatctcaaatcaactgttgagagtgaagaaaatgcaaggcatagtctataccgca 287  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||  ||||||    
T  17362682 aacacaattgatatgaacataacaggcataaacacttctgatcaacatctcaaatcaactgttgagagtaaagaaaatgcaagagatagtcttcaccgca 17362583  T
Q  288 aaagggtcgagaagaaatttctcaaaggggtcatgatcaaggaactgtatcactttataacaacctagtgttcatcctaacaaaataataagaatagaag 387  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  17362582 aaagggtcaagaagaaatttctcaaaggggtcatgatcaaggaactgtatcactttataactacctagtgttcatcctatcaaaataataagaatagaag 17362483  T
Q  388 agcagtataagaaaaaatcatgcattcataagaatagttttcttgtagcataagttggatgagaaatccaatataatgcattcctaaagttcaagccacc 487  Q
    ||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17362482 agcagtataagaaaaaat--------------aatagttttcttgtagcataagttggatgagaaatccaatataatgcattcataaagttcaagccacc 17362397  T
Q  488 cacgacaccatctcacattagaaacatggcgatatcaaactctcaacgtaaacttca-cgttatcgtccttccccaaattgaatattgcattaggaccat 586  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  17362396 cacaacaccatctcacattagaaacatggcgatatcaaactctcaacgtaaacttcagcgttatcgtcctttcccaaattgaatattgcattaggaccat 17362297  T
Q  587 cgatgttttgaatctgtggaaacttaaaagtaccatttttgaaatcacaaacgtccaaacatcctccgtatgtatattccattagaacttggtcttcctc 686  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17362296 cgatgttttgaatctttggaaacttaaaagtaccatttttgaaatcacaaacggccaaacatcctccgtatgtatattccattagaacttggtcttcctc 17362197  T
Q  687 ggaaatccataatgggtaggtggtttttgcattagtgaaaggattgacttccatgtaaggaacacgaaataatttagtccaagacccttcgtttccgtac 786  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17362196 ggaaatccataatgggtaggtggtttttgcattagtgaaaggatcgacttccatgtaaggaacacgaaataatttagtccaagacccttcgtttccgtac 17362097  T
Q  787 tccttcatcagccaagcatcaaaaaatgnnnnnnnacatgcaaagatacacaaacaatttcttgacacacccaagatcactttatacacatcttccactc 886  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17362096 tccttcatcagccaagcatcaaaaaatgtttttttacatgcaaagatacacaaacaatttcttgagacacccaagatcactttatacacatcttccactc 17361997  T
Q  887 catagttaggctgcaaaagtcttttatacgactcggtcaccaaatcaaaagaatcaacactatgagtataattcttcctatatggaatccaatgaagcgc 986  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17361996 catagttaggctgcaaaagtcttttatacgactcggtcaccaaatcaaaagaatcaacactatgagtataatccttcctatatggaatccaatgaagcgc 17361897  T
Q  987 cccactcgcgaattgcagcgatctgtaatgagcatttggaagagggaact 1036  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17361896 cccactcgcgaattgcagcgatctgtaatgagcatttggaagagggaact 17361847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 734 - 1000
Target Start/End: Complemental strand, 17368438 - 17368172
Alignment:
Q  734 cttccatgtaaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaagcatcaaaaaatgnnnnnnnacatgcaaagat 833  Q
    |||||| |||||||||| |||| |||||||||||||||||||| ||||| ||||| |||||||||||| ||||||||||         ||  ||||||||    
T  17368438 cttccaagtaaggaacatgaaacaatttagtccaagacccttcatttccatactctttcatcagccaaacatcaaaaaacctttgtctactagcaaagat 17368339  T
Q  834 acacaaacaatttcttgacacacccaagatcactttatacacatcttccactccatagttaggctgcaaaagtcttttatacgactcggtcaccaaatca 933  Q
    || ||||||||  || || ||| ||||| |||  |||||||||  |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17368338 acgcaaacaatccctcgagacatccaagttcaaattatacacaaattccgctccatagttaggctgcaaaagtcttttatacgactcagtcaccaaatca 17368239  T
Q  934 aaagaatcaacactatgagtataattcttcctatatggaatccaatgaagcgccccactcgcgaatt 1000  Q
    |||||| ||| ||||||| |||||||||||  ||||||||||||||  ||||| |||||| ||||||    
T  17368238 aaagaagcaagactatgaatataattcttcaaatatggaatccaattcagcgcaccactcacgaatt 17368172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 17362821 - 17362734
Alignment:
Q  8 ccaagaatataaagcttaccataaaattaataatcacatccacttcttaatgtgttacttcttaatgctttgttatataaatcagttc 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17362821 ccaagaatataaagcttaccataaaattaataatcacatccacttcttaatgtgttacttcttaatgccttgttatataaatcagttc 17362734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 734 - 801
Target Start/End: Complemental strand, 19119135 - 19119068
Alignment:
Q  734 cttccatgtaaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaa 801  Q
    ||||||||||||||||| |||| ||||||||||||||| |||| ||||| || |||||||||| ||||    
T  19119135 cttccatgtaaggaacatgaaacaatttagtccaagactcttcatttccatattccttcatcaaccaa 19119068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 734 - 801
Target Start/End: Complemental strand, 19126429 - 19126362
Alignment:
Q  734 cttccatgtaaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaa 801  Q
    ||||||||||||||||| |||| ||||||||||||||| |||| ||||| || |||||||||| ||||    
T  19126429 cttccatgtaaggaacatgaaacaatttagtccaagactcttcatttccatattccttcatcaaccaa 19126362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 588 - 633
Target Start/End: Complemental strand, 17368599 - 17368554
Alignment:
Q  588 gatgttttgaatctgtggaaacttaaaagtaccatttttgaaatca 633  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||    
T  17368599 gatgttatgaatctttggaaacttaaaagtaccattttttaaatca 17368554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 1e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 822 - 945
Target Start/End: Original strand, 23231049 - 23231172
Alignment:
Q  822 acatgcaaagatacacaaacaatttcttgacacacccaagatcactttatacacatcttccactccatagttaggctgcaaaagtcttttatacgactcg 921  Q
    |||||||| ||||||||||||||  ||  | ||||||||| |||| |||| ||||| |||| ||||||| |||||||||||||||||| ||||| ||||     
T  23231049 acatgcaaggatacacaaacaatccctcaaaacacccaagttcaccttatgcacatattcccctccataattaggctgcaaaagtcttctatactactca 23231148  T
Q  922 gtcaccaaatcaaaagaatcaaca 945  Q
     ||||||||||||||||| |||||    
T  23231149 atcaccaaatcaaaagaaacaaca 23231172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 742 - 935
Target Start/End: Original strand, 23234853 - 23235045
Alignment:
Q  742 taaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaagcatcaaaaaatgnnnnnnnacatgcaaagatacacaaac 841  Q
    |||||||||||||| ||||||||||||||| || ||||||| || || |||||||||||| ||  | ||||         |||||||| | |||||||||    
T  23234853 taaggaacacgaaacaatttagtccaagactctacgtttccatattctttcatcagccaaacactagaaaaaccgggactacatgcaatg-tacacaaac 23234951  T
Q  842 aatttcttgacacacccaagatcactttatacacatcttccactccatagttaggctgcaaaagtcttttatacgactcggtcaccaaatcaaa 935  Q
    |    ||||| ||||||||  |||| |||| || || |||| ||||||| |||||| ||||||||||| ||||||||||  |||||||||||||    
T  23234952 agccccttgaaacacccaaattcaccttatccaaatattcccctccataattaggcagcaaaagtcttctatacgactcaatcaccaaatcaaa 23235045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 831 - 947
Target Start/End: Original strand, 23239573 - 23239689
Alignment:
Q  831 gatacacaaacaatttcttgacacacccaagatcactttatacacatcttccactccatagttaggctgcaaaagtcttttatacgactcggtcaccaaa 930  Q
    ||||||||||||||  ||  | |||||||||  |||  ||| |||||  ||| ||||||| ||||||||||||||| || ||||| ||||  ||||||||    
T  23239573 gatacacaaacaatccctcaagacacccaagtccacactatgcacatactcccctccataattaggctgcaaaagtgttctatactactcaatcaccaaa 23239672  T
Q  931 tcaaaagaatcaacact 947  Q
    ||||||||| |||||||    
T  23239673 tcaaaagaaacaacact 23239689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 739 - 801
Target Start/End: Complemental strand, 23197079 - 23197017
Alignment:
Q  739 atgtaaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaa 801  Q
    |||||||||| |||||| ||||||||||||||  |||| ||||| || |||||||||||||||    
T  23197079 atgtaaggaatacgaaacaatttagtccaagattcttcatttccatattccttcatcagccaa 23197017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 740 - 801
Target Start/End: Original strand, 7398164 - 7398225
Alignment:
Q  740 tgtaaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaa 801  Q
    |||||| ||||| ||| |||||| |||||||| |||| ||||| ||||||||||||| ||||    
T  7398164 tgtaagaaacacaaaacaatttaatccaagactcttcatttccatactccttcatcaaccaa 7398225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 737 - 806
Target Start/End: Original strand, 7156174 - 7156243
Alignment:
Q  737 ccatgtaaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaagcatc 806  Q
    |||||||||||||||| || ||||||| ||||||  |||| ||||| ||||||||||| |||||| ||||    
T  7156174 ccatgtaaggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatc 7156243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 734 - 812
Target Start/End: Complemental strand, 33038232 - 33038154
Alignment:
Q  734 cttccatgtaaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaagcatcaaaaaa 812  Q
    |||||||||||||||||||  | ||| |||||||||||  || |||||| || |||||||| | |||| ||||||||||    
T  33038232 cttccatgtaaggaacacggtacaatctagtccaagactttttgtttccatattccttcataatccaaacatcaaaaaa 33038154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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