View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5839_high_10 (Length: 389)
Name: NF5839_high_10
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5839_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 10 - 373
Target Start/End: Original strand, 43435760 - 43436123
Alignment:
| Q |
10 |
catcaaaaggtaaaacaacttttaagaaagaaagcagggcattgaatttatctaatcttgaagtgaatgaaatacatgatgaaaaagaatcaattctatt |
109 |
Q |
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| T |
43435760 |
catcaaaaggtaaaacaacttttaagaaagaaagcagggcattgaatttatctaatcttgaagtgaatgaaataaatgatgaaaaagaatcaattctatt |
43435859 |
T |
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| Q |
110 |
gttacaaccttgagagatcccattctaatgtagcagggatcttttgtgggaggtgaaggttctgaacccgagcatacaggagatgaaggacaatcgccgc |
209 |
Q |
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| T |
43435860 |
gttacaaccttgagagatcccattctaatggagcagggatcttttgtgggaggtgaaggttctgaacccgagcatacaggagatgaaggacaatcgccgc |
43435959 |
T |
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| Q |
210 |
atgagcagccgagtgaagtgtcattgcatgaatagacaggtgcattcataggtttcataggagaagagtcaggaatggttgtcttaaaatgtatagaata |
309 |
Q |
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| T |
43435960 |
atgagcagccgagtgaagtgtcattgcatgaatagacaggtgcattcataggtttcataggagaagagtcaggaatggttgtcttaaaatgtatagaata |
43436059 |
T |
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| Q |
310 |
aggtgaaccaggaaaaccaagagggactttttgtccaagaaatgaaaaccactcttgataattg |
373 |
Q |
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| T |
43436060 |
aggtgaaccaggaaaaccaagagggactttttgtccaagaaatgaaaaccactcttgataattg |
43436123 |
T |
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