View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5839_high_11 (Length: 380)
Name: NF5839_high_11
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5839_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 5114342 - 5113990
Alignment:
| Q |
17 |
atgtcataaaaaccatcaattgttctatccattatttgctgttggttcacacatacaagctcacttaaatcccttggaaaattttcaaacccttgaaata |
116 |
Q |
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| T |
5114342 |
atgtcataaaaaccatcaattgttctatccattatttgctgttggttcacacatacaagctcacttaaatcccttggaaaattttcaaacccttgaaata |
5114243 |
T |
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| Q |
117 |
tatgtgatggttggcaatttccaccattgtttgtaattgtattactcaccatggaaaaagggtttggaatgttcattaaacttgtgaaggatgtttgatt |
216 |
Q |
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| T |
5114242 |
tatgtgatggttggcaatttccaccattgtttgtaattgtattactcaccatggaaaaagggtttggaatgttcattaaacttgtgaaggatgtttgatt |
5114143 |
T |
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| Q |
217 |
gttcgtatcataatcaattatggatgaatttgaaactggcataggatgaacagaatactctgcaggccaataaggagctgaactcatactattgacaccc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
5114142 |
gttcgtatcataatcaattatggatgaatttgaaactggcataggatgaacagaatactctgcaggccaatatggtgctgaactcatactattgacaccc |
5114043 |
T |
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| Q |
317 |
gaagccgccatcatcaaattctgatttgtttctcttttcatctcttgtttcat |
369 |
Q |
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| T |
5114042 |
aaagccgccatcatcaaattctgatttgtttctcttttcatctcttgtttcat |
5113990 |
T |
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