View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5839_high_16 (Length: 332)
Name: NF5839_high_16
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5839_high_16 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 321
Target Start/End: Complemental strand, 46028 - 45720
Alignment:
| Q |
22 |
acgccacacataaacgacaaaatcataaataaaagtgaaaaaatccacgtggaaatcatca--------------tataattttttcttacgnnnnnnnc |
107 |
Q |
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| T |
46028 |
acgccacacataaacgacaaaatcataaataaaagtgaaaaaatccacgtggaaatcatcaaattcaactcatcatataattttttcttac-aaaaaaac |
45930 |
T |
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| Q |
108 |
tcatgaaagaatttttattaaaagaaacaaagatttggaatgccgagtagcatcatccctacaaaaatgagggagtacgtaggagtacctctatgtgata |
207 |
Q |
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| T |
45929 |
tcatgaaagaatttttattaaaagaaacaaagatttggaatgccgagtagcatcttccctacaaaaattagggagta----ggagtacctctatgtgata |
45834 |
T |
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| Q |
208 |
ggaatcctatgctcaatttcaggctaattacatagtgactgcacccacatgcagattttttactgttcaaacactgttttctataccagaatgatcccaa |
307 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45833 |
ggaatcctatgttcaatttcaggctaattacatagtgactgcacccacatgcaaattttttactgttcaaacactgttttctataccagaatgatcccaa |
45734 |
T |
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| Q |
308 |
agaatcaggttcat |
321 |
Q |
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|||||||||||||| |
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| T |
45733 |
agaatcaggttcat |
45720 |
T |
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