View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5839_high_17 (Length: 316)
Name: NF5839_high_17
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5839_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 27064383 - 27064096
Alignment:
| Q |
11 |
cacagacactaacactaacaaagaaaaactgactcagatagaccaattggttatgtgctcagatgcaaagtaaaaagcagtatacttttattagtggtaa |
110 |
Q |
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| T |
27064383 |
cacagacactaacactaacaaagaaaaactgactcagatagaccaattggttatgtgctcagatgcaaagtaaaaagcagtatacttttattagtggtaa |
27064284 |
T |
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| Q |
111 |
agatgctattttcttgaaagtttattggattattgtattcagctatctatgttattttggttaaaaatttgttctgaagagaaagggaaaaggagcacac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27064283 |
agatgctattttcttgaaagtttattggattattgtattcagctatctatgttattttggttaaaaatttgttctgaagagaaagggaaaaggagcacac |
27064184 |
T |
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| Q |
211 |
agagaagctttcaggattggaagtttgttgcgtgggtcaggattacttacatgtattcaattttgggaaaattttcagtggcccatct |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27064183 |
agagaagctttcaggattggaagtttgttgcgtgggtcaggattacttacatgcattcaattttgggaaaattttcagtggcccatct |
27064096 |
T |
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