View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5839_high_23 (Length: 243)
Name: NF5839_high_23
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5839_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28469359 - 28469581
Alignment:
| Q |
1 |
tagcaatctataggttttggcactcaagtctattgttctgattatatcaaagttcaagttcatcaaattgattatgtattcacacgaacccacttttgat |
100 |
Q |
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| T |
28469359 |
tagcaatctataggttttggcactcaagtctattgttctgattatatcaaagttcaagttcgtcaaattgattatgtattcacacgaacccacttttgat |
28469458 |
T |
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| Q |
101 |
cttgctaccacacaatgtttaccttttcgaagagacaaagtttcttccaacaagttgcatccttgtctactgaaaggctttttgaacggtacttgctgaa |
200 |
Q |
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| T |
28469459 |
cttgctaccacacaatgtttaccttttcgaagagacaaagtttcttccaacaagttgcatccttgtctactgaaaggctttttgaacggtacttgttgaa |
28469558 |
T |
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| Q |
201 |
agtcccacatcagagatgataga |
223 |
Q |
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| T |
28469559 |
agtcccacatcagagatgataga |
28469581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 28487006 - 28487158
Alignment:
| Q |
1 |
tagcaatctataggttttggcactcaagtctattgttctgattatatcaaagttcaagttcatcaaattgattatgtattcacacgaacccacttttgat |
100 |
Q |
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| T |
28487006 |
tagcaatctataggttttggcattcaagtctgttgttccgattatatcaaaattcaagttcatcaaattgattatgtattcatgcgaacccacttttgat |
28487105 |
T |
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| Q |
101 |
cttgctaccacacaatgtttaccttttcgaagagacaaagtttcttccaacaa |
153 |
Q |
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| T |
28487106 |
cttgctacaacacaatgtttaccttttcgaagagaaaaagtttcctccaacaa |
28487158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 30685831 - 30685979
Alignment:
| Q |
4 |
caatctataggttttggcactcaagtctattgttctgattatatcaaagttcaagttcatcaaattgattatgtattcacacgaacccacttttgatctt |
103 |
Q |
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| T |
30685831 |
caatctataggttttcacatacaagtttgttgttcagtttatatcaaaatccaagttcatcaaattgactacgtattcacactaatccacttttgatctt |
30685930 |
T |
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| Q |
104 |
gctaccacacaatgtttaccttttcgaagagacaaagtttcttccaacaa |
153 |
Q |
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| T |
30685931 |
gct-caacacaacgtttacctttctgacgagaggaagtttcctccaacaa |
30685979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 28487174 - 28487225
Alignment:
| Q |
153 |
agttgcatccttgtctactgaaaggctttttgaacggtacttgctgaaagtc |
204 |
Q |
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| T |
28487174 |
agttgcatccttgtctactgaaatgctttttgaacagtacttgttaaaagtc |
28487225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 30686006 - 30686056
Alignment:
| Q |
164 |
tgtctactgaaaggctttttgaacggtacttgctgaaagtcccacatcaga |
214 |
Q |
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| T |
30686006 |
tgtctactgaaatgctttttgaacagtactcgctgaaagtcccacgtcaga |
30686056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 38000230 - 38000303
Alignment:
| Q |
56 |
aagttcatcaaatt--gattatgtattcacacgaacccacttttgatcttgctaccacacaatgtttacctttt |
127 |
Q |
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|||||||||||||| ||||| ||||||||| ||||||| |||||||| ||||| |||||||||||| ||||| |
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| T |
38000230 |
aagttcatcaaattttgattacatattcacactaacccacctttgatctggctacaacacaatgtttaactttt |
38000303 |
T |
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