View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5839_high_27 (Length: 231)
Name: NF5839_high_27
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5839_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 2442996 - 2442796
Alignment:
| Q |
15 |
attctataaacaatcatgggctacacttgatttgtatatgggaaaaataacccacaaaataattggaataaattattacaaaaatatgtgtgaattcctt |
114 |
Q |
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| T |
2442996 |
attctataaacaatcatgggctacacttgatttgtatatgggaaaaataacccacaaaataattggaataaattattacaaaaatatgtgtgaattcctt |
2442897 |
T |
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| Q |
115 |
actcaacaatatttgtatatgagtttgttaaccttgtttttgtttcaagttcatctcactgacactgtttaccagaaattgatcgagggctcctctatat |
214 |
Q |
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| T |
2442896 |
actcaacaatatttgtatatgagtttgttaaccttgtttttgtttcaagttcatcacactaacactgtttaccagaaattgatcgagggcttctttatat |
2442797 |
T |
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| Q |
215 |
t |
215 |
Q |
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| T |
2442796 |
t |
2442796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 50984068 - 50984157
Alignment:
| Q |
15 |
attctataaacaatcatggg-ctacacttgatttgtatatgggaaaaataacccacaaaataattggaataaattattacaaaaatatgtg |
104 |
Q |
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| T |
50984068 |
attctataaacaatcatggggctacacttgatctgtttatgggaaaaataacccac-aaataattggagtaaattattgcaaaaatgtgtg |
50984157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 50984196 - 50984267
Alignment:
| Q |
146 |
ccttgtttttgtttcaagttcatctcactgacac--tgtttaccagaaattgatcgagggctcctctatatt |
215 |
Q |
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| T |
50984196 |
ccttgattttgtttcaacttcatctcactgaaactgtgttttctagaaattgattgagggcttctctatatt |
50984267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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