View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5839_high_6 (Length: 521)

Name: NF5839_high_6
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5839_high_6
NF5839_high_6
[»] chr3 (8 HSPs)
chr3 (1-505)||(47193429-47193933)
chr3 (1-170)||(9792529-9792698)
chr3 (152-390)||(26698512-26698750)
chr3 (152-390)||(26733675-26733913)
chr3 (152-390)||(26736900-26737138)
chr3 (2-347)||(26750879-26751224)
chr3 (143-210)||(47212255-47212322)
chr3 (152-390)||(26713664-26713902)
[»] chr7 (8 HSPs)
chr7 (6-176)||(6609317-6609487)
chr7 (6-176)||(6624634-6624804)
chr7 (2-213)||(21130440-21130657)
chr7 (2-210)||(18658605-18658819)
chr7 (8-213)||(21111480-21111691)
chr7 (143-210)||(29213017-29213084)
chr7 (159-213)||(21098712-21098766)
chr7 (99-213)||(21123312-21123426)
[»] chr4 (3 HSPs)
chr4 (311-400)||(39132397-39132486)
chr4 (152-213)||(39132235-39132296)
chr4 (1-57)||(39132078-39132134)
[»] chr1 (1 HSPs)
chr1 (159-196)||(11791111-11791148)
[»] chr2 (1 HSPs)
chr2 (307-343)||(23466619-23466655)


Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 47193429 - 47193933
Alignment:
Q  1 aattgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193429 aattgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattca 47193528  T
Q  101 cttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193529 cttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtga 47193628  T
Q  201 aacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgattttggtttatcaaaactattgaatagagatgaacgtgatagttctgcttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193629 aacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgattttggtttatcaaaactattgaatagagatgaacgtgatagttctgcttt 47193728  T
Q  301 ttcaagaataagagggacaagaggttatatggcacctgaatgggtttataatcttcgtattacttcaaaagttgatgtttatagttatgggattgttttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193729 ttcaagaataagagggacaagaggttatatggcacctgaatgggtttataatcttcgtattacttcaaaagttgatgtttatagttatgggattgttttg 47193828  T
Q  401 cttgaaatggtgagtggaaaaagtccaatggaaattcatagtgttgttgataatagtggaggtttggagcatcatcatcgaatggtgagttgggtgatgg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193829 cttgaaatggtgagtggaaaaagtccaatggaaattcatagtgttgttgataatagtggaggtttggagcatcatcatcgaatggtgagttgggtgatgg 47193928  T
Q  501 aaaag 505  Q
    |||||    
T  47193929 aaaag 47193933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 9792529 - 9792698
Alignment:
Q  1 aattgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattca 100  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||| ||||  |||||||||||||||||||||    
T  9792529 aattgatatgtggggatattgtgttgaagggaaaaatagacttttggtttatgagtatatggaacatggttcattagttgagaatctatgttctaattca 9792628  T
Q  101 cttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagt 170  Q
     |||||||||||||||| |||||  ||| ||||| |||| |||||||||| |||||||||| ||||||||    
T  9792629 gttgattggaataagagatttaagatagttgttgcaacaactaaaggtttcgcttatttacttgaagagt 9792698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 152 - 390
Target Start/End: Complemental strand, 26698750 - 26698512
Alignment:
Q  152 gcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgatt 251  Q
    ||||||||||| |||||||||||||| ||| |||| ||||| ||| | || || ||||| ||  |  ||||| |  ||| |||||| ||||| || ||||    
T  26698750 gcttatttacacgaagagtgtttggagtggattttgcattgcgatataaagccacaaaacatacttgttgactcggattatcaacctaaggtagcagatt 26698651  T
Q  252 ttggtttatcaaaactattgaatagagatgaacgtgatagttctgctttttcaagaataagagggacaagaggttatatggcacctgaatgggtttataa 351  Q
    ||||||| || || |||||||||||  |||| | ||||| |||   ||| || || ||  |||||||||||||||| |||||||||||||||||||  ||    
T  26698650 ttggtttgtctaagctattgaataggaatgaccttgataattcaaatttctcgaggattcgagggacaagaggttacatggcacctgaatgggttttcaa 26698551  T
Q  352 tcttcgtattacttcaaaagttgatgtttatagttatgg 390  Q
      | |  |||||||||||||| ||||||||||| |||||    
T  26698550 catgcaaattacttcaaaagtggatgtttatagctatgg 26698512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 152 - 390
Target Start/End: Complemental strand, 26733913 - 26733675
Alignment:
Q  152 gcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgatt 251  Q
    ||||||||||| |||||||||||||| ||| |||| ||||| ||| | || || ||||| ||  |  ||||| |  ||| |||||| ||||| || ||||    
T  26733913 gcttatttacacgaagagtgtttggagtggattttgcattgcgatataaagccacaaaacatacttgttgactcggattatcaacctaaggtagcagatt 26733814  T
Q  252 ttggtttatcaaaactattgaatagagatgaacgtgatagttctgctttttcaagaataagagggacaagaggttatatggcacctgaatgggtttataa 351  Q
    ||||||| || || |||||||||||  |||| | ||||| |||   ||| || || ||  |||||||||||||||| |||||||||||||||||||  ||    
T  26733813 ttggtttgtctaagctattgaataggaatgaccttgataattcaaatttctcgaggattcgagggacaagaggttacatggcacctgaatgggttttcaa 26733714  T
Q  352 tcttcgtattacttcaaaagttgatgtttatagttatgg 390  Q
      | |  |||||||||||||| ||||||||||| |||||    
T  26733713 catgcaaattacttcaaaagtggatgtttatagctatgg 26733675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 390
Target Start/End: Complemental strand, 26737138 - 26736900
Alignment:
Q  152 gcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgatt 251  Q
    |||||||||||||||||||||||||| ||| |||| ||||| ||| | || || ||||| ||  |  ||||| |  ||| || ||| |||||||| ||||    
T  26737138 gcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactctgattatcgacctaaggttgcagatt 26737039  T
Q  252 ttggtttatcaaaactattgaatagagatgaacgtgatagttctgctttttcaagaataagagggacaagaggttatatggcacctgaatgggtttataa 351  Q
    ||||||| || || |||||||| ||  |||| | ||||| |||    || ||||| ||  |||||||| ||||||| |||||||||||||||||||  ||    
T  26737038 ttggtttgtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgaggttacatggcacctgaatgggttttcaa 26736939  T
Q  352 tcttcgtattacttcaaaagttgatgtttatagttatgg 390  Q
      | |  || ||||||||||| ||||||||||| |||||    
T  26736938 catgcaaatcacttcaaaagtggatgtttatagctatgg 26736900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 347
Target Start/End: Complemental strand, 26751224 - 26750879
Alignment:
Q  2 attgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattcac 101  Q
    |||| ||||||||| ||||||| ||| || || |||||  | ||||| |||||||| || ||| | ||| ||||||| || ||||| |  || |||  ||    
T  26751224 attggtatgtggggttattgtgctgagggaaagcatagattgttggtttatgagtacatggaaaagggtactttagctgataatctctcatcaaatgaac 26751125  T
Q  102 ttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaa 201  Q
    ||||||||  |||||||| |||  | ||| | ||||| || || ||  | || |||||||| ||||| |||||||| ||| |||| ||||| ||| | ||    
T  26751124 ttgattggggtaagaggtataacattgctatgggaactgcaaagggacttgcgtatttacacgaagaatgtttggagtggattttgcattgcgatataaa 26751025  T
Q  202 acctcaaaatattttacttgacacaaattttcaaccaaaggttgctgattttggtttatcaaaactattgaatagagatgaacgtgatagttctgctttt 301  Q
    ||| ||||| ||  |  ||||| |  |||  ||||| ||||| |||||||||||| | || || ||||||||||| ||||| | ||||| |||   |||     
T  26751024 accgcaaaacatacttgttgactccgattaccaaccgaaggtagctgattttggtctgtccaagctattgaatagggatgaccttgataattcaaatttc 26750925  T
Q  302 tcaagaataagagggacaagaggttatatggcacctgaatgggttt 347  Q
    || || ||  |||||||||||||||| |||||||||||||||||||    
T  26750924 tcgaggattcgagggacaagaggttacatggcacctgaatgggttt 26750879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 47212322 - 47212255
Alignment:
Q  143 aaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaa 210  Q
    ||||||||||||||| | ||||||||||||||||| ||| |||| |||||||||||||| || |||||    
T  47212322 aaaggtttggcttatatccatgaagagtgtttggagtggattttgcattgtgatgtgaagccacaaaa 47212255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 152 - 390
Target Start/End: Complemental strand, 26713902 - 26713664
Alignment:
Q  152 gcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgatt 251  Q
    |||||||||||||||||||||||||| ||| |||| ||||| ||| | || || ||||| ||  |  |||||    ||| || ||| |||||||| ||||    
T  26713902 gcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactatgattatcgacctaaggttgcagatt 26713803  T
Q  252 ttggtttatcaaaactattgaatagagatgaacgtgatagttctgctttttcaagaataagagggacaagaggttatatggcacctgaatgggtttataa 351  Q
    ||||||| || || |||||||| ||  |||| | ||||| |||    || ||||| ||  |||||||| ||||||| |||||||||||||||||||  ||    
T  26713802 ttggtttgtctaagctattgaaaaggaatgagcatgataattcaaacttctcaaggattcgagggacacgaggttacatggcacctgaatgggttttcaa 26713703  T
Q  352 tcttcgtattacttcaaaagttgatgtttatagttatgg 390  Q
      | |  || ||||||||||| ||||||||||| |||||    
T  26713702 catgcaaatcacttcaaaagtggatgtttatagctatgg 26713664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 6e-63; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 6609487 - 6609317
Alignment:
Q  6 atatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattcacttga 105  Q
    |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||| ||||  ||||||||||||||||||||||||||    
T  6609487 atatgtggggatattgtgttgaggggaaacataggcttctggtttatgagtatatggaacatggttcattagttgagaatctatgttctaattcacttga 6609388  T
Q  106 ttggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttgg 176  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  6609387 ttggaataagagatttaatgtagttgttgcaacagctaaaggtttggtttatgtacatgaagagtgtttgg 6609317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 6 - 176
Target Start/End: Original strand, 6624634 - 6624804
Alignment:
Q  6 atatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgttctaattcacttga 105  Q
    |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||  ||||||||||| ||||  ||||||||||||||||||||||||||    
T  6624634 atatgtggggatattgtgttgaggggaaacataggcttctggtttatgagtatacggaacatggttcattagttgagaatctatgttctaattcacttga 6624733  T
Q  106 ttggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttgg 176  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||||| |||| ||||||||||||||||||    
T  6624734 ttggaataagagatttaatgtagttgttgcaacagctaaaggtttggtttatgtacatgaagagtgtttgg 6624804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 21130657 - 21130440
Alignment:
Q  2 attgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgtt------cta 95  Q
    ||||| ||||||||||||||||||||||| || |||||  ||||||| |||||||| || ||| |||||||||||||||| ||||| |  |      | |    
T  21130657 attgaaatgtggggatattgtgttgaaggtaagcatagaattttggtatatgagtacatggaaaatggttctttagcggaaaatctttcatccaaaacca 21130558  T
Q  96 attcacttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtga 195  Q
    |  |||||||||||| ||| |||| | || | ||| | |||||||||| || ||| || ||| |||||||||| |||||||||||| |||| ||||||||    
T  21130557 acacacttgattggactaaaaggtatgatattgctttaggaacagctagagttttagcatatctacatgaagaatgtttggaatggattttgcattgtga 21130458  T
Q  196 tgtgaaacctcaaaatat 213  Q
    | | || |||||||||||    
T  21130457 tataaagcctcaaaatat 21130440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 18658819 - 18658605
Alignment:
Q  2 attgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgtt------cta 95  Q
    |||||||||||||||||||||| |||||| || ||||| |||||||| |||||||| || ||| |||| |||||||| || ||||| |  |      |||    
T  18658819 attgatatgtggggatattgtgctgaaggtaagcatagacttttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaacta 18658720  T
Q  96 attcacttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtga 195  Q
    |  ||||||| |||| ||| |||| | || | ||| | ||||||||||||| | | |||||| |||||||||| |||||||||||| |||| ||||||||    
T  18658719 acacacttgactggagtaaaaggtatgatattgctttaggaacagctaaagttctagcttatctacatgaagaatgtttggaatggattttgcattgtga 18658620  T
Q  196 tgtgaaacctcaaaa 210  Q
    | | || ||||||||    
T  18658619 tataaagcctcaaaa 18658605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 21111691 - 21111480
Alignment:
Q  8 atgtggggatattgtgttgaagggaaacataggcttttggtctatgagtatatagaacatggttctttagcggagaatctatgtt------ctaattcac 101  Q
    |||||||||||||||| |||||| || ||||| |||||||| |||||||| || ||| |||| |||||||| || ||||| |  |      ||||  |||    
T  21111691 atgtggggatattgtgctgaaggtaagcatagacttttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacac 21111592  T
Q  102 ttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaa 201  Q
    ||||||||| ||| |||| | || | ||| | |||||||||| || | | |||||| |||||||||| ||| | |||||| | || ||||||||| | ||    
T  21111591 ttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtctcgaatggatattgcattgtgatataaa 21111492  T
Q  202 acctcaaaatat 213  Q
     |||||||||||    
T  21111491 gcctcaaaatat 21111480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 29213084 - 29213017
Alignment:
Q  143 aaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaa 210  Q
    ||||||||||||||| |  |||||||||||||||| ||| |||| |||||||||||||| || |||||    
T  29213084 aaaggtttggcttatatttatgaagagtgtttggagtggattttgcattgtgatgtgaagccacaaaa 29213017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 21098712 - 21098766
Alignment:
Q  159 tacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatat 213  Q
    |||||||||| |||||||||||| |||||||||||||| | || || ||||||||    
T  21098712 tacatgaagaatgtttggaatggattttacattgtgatataaagccgcaaaatat 21098766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 21123426 - 21123312
Alignment:
Q  99 cacttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgt 198  Q
    |||||||||||| ||| |||| | || | ||| | |||||||||| || | | |||||| |||||||||| ||| |||| ||| |||| ||||||||| |    
T  21123426 cacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtatggagtggattttgcattgtgatat 21123327  T
Q  199 gaaacctcaaaatat 213  Q
     || |||||||||||    
T  21123326 aaagcctcaaaatat 21123312  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 400
Target Start/End: Original strand, 39132397 - 39132486
Alignment:
Q  311 agagggacaagaggttatatggcacctgaatgggtttataatcttcgtattacttcaaaagttgatgtttatagttatgggattgttttg 400  Q
    ||||| |||||||| |||||||| |||||||||||||  ||| | |  || || || ||||| |||||||||||||||||||||||||||    
T  39132397 agaggaacaagaggatatatggctcctgaatgggttttcaatttaccaataacatctaaagtggatgtttatagttatgggattgttttg 39132486  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 39132235 - 39132296
Alignment:
Q  152 gcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatat 213  Q
    |||||| |||||||||| |||||||| ||| |||||||||||||| | || |||||||||||    
T  39132235 gcttatctacatgaagaatgtttggagtggattttacattgtgatataaagcctcaaaatat 39132296  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 39132078 - 39132134
Alignment:
Q  1 aattgatatgtggggatattgtgttgaagggaaacataggcttttggtctatgagta 57  Q
    |||||| ||||||||||||||||||||||| || |||||  ||||||| ||||||||    
T  39132078 aattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtatatgagta 39132134  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 11791148 - 11791111
Alignment:
Q  159 tacatgaagagtgtttggaatgggttttacattgtgat 196  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  11791148 tacatgaggagtgtttggaatgggttttgcattgtgat 11791111  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 23466655 - 23466619
Alignment:
Q  307 aataagagggacaagaggttatatggcacctgaatgg 343  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  23466655 aataagaggaacaagaggttatatggcaccagaatgg 23466619  T

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