View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5839_high_9 (Length: 394)
Name: NF5839_high_9
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5839_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 46415139 - 46414776
Alignment:
| Q |
18 |
tttcaaacaatctctttctctagggtcttcagaatcaaaaagatcaagtaatcttaaaacaaaagcatgatctacgtgggattttgcaagcttcacatca |
117 |
Q |
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| T |
46415139 |
tttcaaacaatctctttctctagggtcttcagaatcaaaaaggtcaagtaatcttaaaacaaaagcatgatctacgtgggattttgcaagcttcacatca |
46415040 |
T |
|
| Q |
118 |
agagagttgtaattgatgaattgaagcaggagatcataaacaacttgcaggtgagaccaagcaggatcaaacataggctcttcatcttctgtttctccgc |
217 |
Q |
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| T |
46415039 |
agagagttgtaattgatgaattgaagcaggagatcataaacaacttgcaggtgagaccaagcaggatcaaacataggctcttcatcttctgtttctccgc |
46414940 |
T |
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| Q |
218 |
cactactcgaacgaaacttaggtgggaaaaccctaaacaaattggttgcacacattttacacaacgcagcaattgctggttctgtaaactttacagaacc |
317 |
Q |
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| T |
46414939 |
cactactcgaacgaaacttaggtgggaaaaccctaaacaaattggttgcacacattttacacaacgcagcaattgctggttctgtaaactttacagaacc |
46414840 |
T |
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| Q |
318 |
agatgaaacaaaatcaacaaggtctaacaatgtttggcgtttaacgtcttgttctgtacagttc |
381 |
Q |
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| T |
46414839 |
agatgaaacaaaatcaacaaggtctaacaatgtttggcgtttaacgtcttgttctgtacagttc |
46414776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 2030704 - 2030666
Alignment:
| Q |
18 |
tttcaaacaatctctttctctagggtcttcagaatcaaa |
56 |
Q |
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| T |
2030704 |
tttcaaacaatctctttctctaggatcctcagaatcaaa |
2030666 |
T |
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