View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5839_low_18 (Length: 325)

Name: NF5839_low_18
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5839_low_18
NF5839_low_18
[»] chr2 (23 HSPs)
chr2 (19-325)||(10348435-10348741)
chr2 (18-211)||(10336560-10336750)
chr2 (25-265)||(9283391-9283628)
chr2 (26-210)||(7114863-7115047)
chr2 (28-251)||(9329305-9329528)
chr2 (19-140)||(10372699-10372820)
chr2 (22-242)||(12018128-12018345)
chr2 (25-241)||(9275241-9275455)
chr2 (22-138)||(9316844-9316960)
chr2 (26-200)||(12011811-12011982)
chr2 (25-138)||(9060315-9060428)
chr2 (26-211)||(12005383-12005565)
chr2 (18-140)||(10353962-10354084)
chr2 (28-140)||(9321808-9321920)
chr2 (26-211)||(11986743-11986925)
chr2 (23-140)||(9292745-9292862)
chr2 (28-140)||(8572722-8572833)
chr2 (22-138)||(9357935-9358051)
chr2 (28-156)||(7612697-7612825)
chr2 (28-212)||(17565334-17565514)
chr2 (58-107)||(9365445-9365494)
chr2 (61-136)||(14551140-14551215)
chr2 (35-107)||(8578752-8578824)
[»] scaffold0667 (1 HSPs)
scaffold0667 (22-140)||(5276-5394)
[»] chr4 (2 HSPs)
chr4 (18-140)||(26575696-26575818)
chr4 (61-162)||(561965-562066)
[»] chr3 (2 HSPs)
chr3 (22-138)||(37463341-37463457)
chr3 (26-211)||(39428633-39428809)
[»] chr8 (1 HSPs)
chr8 (22-131)||(41965936-41966045)
[»] chr1 (4 HSPs)
chr1 (43-140)||(29452586-29452683)
chr1 (43-131)||(29467060-29467148)
chr1 (43-131)||(29424040-29424128)
chr1 (43-131)||(29442594-29442682)
[»] chr5 (1 HSPs)
chr5 (26-136)||(36225571-36225681)


Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 10348741 - 10348435
Alignment:
Q  19 attctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10348741 attctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattca 10348642  T
Q  119 tcaaccttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10348641 tcaaccttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttccctaacctaaccaaatctat 10348542  T
Q  219 cattccactcaaccatcccttcaccaccaacatcgatccttccacgcggagccccaccgacctcctccgtaacagtaaaatgtctcttatcggttcatgt 318  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348541 cattccactcaactatcccttcactaccaacatcgatccttccacgcggagccccaccgacctcctccgtaacagtaaaatgtctcttatcggttcatgt 10348442  T
Q  319 aacggcc 325  Q
    |||||||    
T  10348441 aacggcc 10348435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 10336750 - 10336560
Alignment:
Q  18 aattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattc 117  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  10336750 aattctctccgaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattc 10336651  T
Q  118 atcaaccttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacca 211  Q
    ||||||||||||||  ||||||| || ||||| |||||||||||||||| |||    |||||  ||||||| |||||||||||| |||||||||    
T  10336650 atcaaccttcaccttcaaaattccctcaattttaacctcatcctccgtcgcaa---aaccgacctctaccacctccatttccctaacctaacca 10336560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 9283391 - 9283628
Alignment:
Q  25 gccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacc 124  Q
    ||||||||||||||| ||||||| || |||||||| ||||||||||||||||| || |||||||||  |||| |||| ||||| | ||||||||||||||    
T  9283391 gccgaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaacc 9283490  T
Q  125 ttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctatcattcc 224  Q
    ||||||| |||| ||| || || ||||| ||||||||||||||||| ||||   || ||||||||||| |||||||| ||||||||||||| || || ||    
T  9283491 ttcacctcaaaagttccctcaacttcaaactcatcctccgtcacaagacca---atctctaccaactcgatttccctaacctaaccaaatccataatacc 9283587  T
Q  225 actcaaccatcccttcaccaccaacatcgatccttccacgc 265  Q
     ||||||||||| |||||||||||||||||||||| |||||    
T  9283588 gctcaaccatcctttcaccaccaacatcgatcctttcacgc 9283628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 7114863 - 7115047
Alignment:
Q  26 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 125  Q
    ||||||||||||| ||| |||| |||  ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||    
T  7114863 ccgaaatcttctctcgcctaccagtacgatcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaacct 7114962  T
Q  126 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacc 210  Q
    ||| || ||||||||  | ||||||||| |||||||||||||||| | || |||| |||||||||||||||||||| ||||||||    
T  7114963 tcatcttaaaaattccttcaatttcaacttcatcctccgtcacaagaacaacgatctctaccaactccatttccctaacctaacc 7115047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 251
Target Start/End: Complemental strand, 9329528 - 9329305
Alignment:
Q  28 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 127  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||| ||||  |||||||    
T  9329528 gaaatcctctcccgcttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttc 9329429  T
Q  128 acct---aaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctatcattcc 224  Q
    ||||   ||| ||||| || |||||||||||||||||   |||   ||  |||||| ||||||||||| || | ||| | ||||||||||| || |||||    
T  9329428 acctcaaaaataattccctcaatttcaacctcatcct---tcagctcaataccgatctctaccaactcgatcttcctaatctaaccaaatccatgattcc 9329332  T
Q  225 actcaaccatcccttcaccaccaacat 251  Q
    |||||||||||| |||| |||||||||    
T  9329331 actcaaccatcctttcagcaccaacat 9329305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 10372820 - 10372699
Alignment:
Q  19 attctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattca 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| | ||||||||    
T  10372820 attctcgccgaagtcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattca 10372721  T
Q  119 tcaaccttcacctaaaaaattc 140  Q
    |||||||||||||  |||||||    
T  10372720 tcaaccttcacctccaaaattc 10372699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 12018128 - 12018345
Alignment:
Q  22 ctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatca 121  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||| | ||| |||| ||    
T  12018128 ctcgccgaaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcacca 12018227  T
Q  122 accttcacctaaaaaa---ttctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctat 218  Q
    | ||||| || |||||    || || |||||||||||||||||||||||| |   |||| || ||||||||||||||||||||  ||||||||   |  |    
T  12018228 atcttcaactcaaaaactcatccctcaatttcaacctcatcctccgtcacga---cacccatctctaccaactccatttccctaccctaacca---ccgt 12018321  T
Q  219 cattccactcaaccatcccttcac 242  Q
    ||| |||||||||||||| |||||    
T  12018322 catcccactcaaccatcctttcac 12018345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 9275455 - 9275241
Alignment:
Q  25 gccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacc 124  Q
    ||||||||||||||||| ||||| ||| ||||||||||| |||||||||||| |||||||||||||||||| || || ||||| | ||| ||||||||||    
T  9275455 gccgaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaacc 9275356  T
Q  125 ttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctatcattcc 224  Q
    |||| || |||||||| || |||||||||||||| || |  ||||||||  || |  ||||| ||||| |||||||| ||||||||||||  || || |     
T  9275355 ttcatctcaaaaattccctcaatttcaacctcattcttcaacacaacac--ccaaactctacgaactcaatttccctaacctaaccaaattcataataca 9275258  T
Q  225 actcaaccatcccttca 241  Q
    |||||||||||| ||||    
T  9275257 actcaaccatcctttca 9275241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 9316960 - 9316844
Alignment:
Q  22 ctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatca 121  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| | ||| |||||||    
T  9316960 ctcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatagattctcacaacttcatca 9316861  T
Q  122 accttcacctaaaaaat 138  Q
    |||||||||| ||||||    
T  9316860 accttcacctcaaaaat 9316844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 200
Target Start/End: Original strand, 12011811 - 12011982
Alignment:
Q  26 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 125  Q
    |||||||||||||||||||||    | ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||| |||| ||| ||    
T  12011811 ccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatct 12011910  T
Q  126 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttccc 200  Q
    |||||| ||||| ||||  || ||||||||||||||||| ||||||||||   || |||| ||||||||||||||    
T  12011911 tcacctcaaaaactctcacaacttcaacctcatcctccgccacaacacca---atctctatcaactccatttccc 12011982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 9060315 - 9060428
Alignment:
Q  25 gccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacc 124  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||  ||||    
T  9060315 gccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcactaacc 9060414  T
Q  125 ttcacctaaaaaat 138  Q
    || |||| ||||||    
T  9060415 tttacctcaaaaat 9060428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 26 - 211
Target Start/End: Original strand, 12005383 - 12005565
Alignment:
Q  26 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 125  Q
    ||||||||||||||||||||||   | ||||||||||||||||||| ||||| ||| |||| ||||||||| |||||||||| | ||| |||| ||||||    
T  12005383 ccgaaatcttctcccgcttacctccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaacct 12005482  T
Q  126 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacca 211  Q
    ||| |||||||||||||| ||| ||||||| |||||| | ||||| ||||   || ||| ||| |||||||||||| | |||||||    
T  12005483 tcatctaaaaaattctctcaatctcaaccttatcctcggccacaaaacca---atctcttccacctccatttccctaatctaacca 12005565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 10354084 - 10353962
Alignment:
Q  18 aattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattc 117  Q
    ||||||| |||||||| | |||||||||||||||| |||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||   |||||||    
T  10354084 aattctcaccgaaatcctttcccgcttaccggtaatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattc 10353985  T
Q  118 atcaaccttcacctaaaaaattc 140  Q
    |||||||||||||| | ||||||    
T  10353984 atcaaccttcacctcagaaattc 10353962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 9321920 - 9321808
Alignment:
Q  28 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 127  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||| | | | |||||||||||||    
T  9321920 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttc 9321821  T
Q  128 acctaaaaaattc 140  Q
    | || ||||||||    
T  9321820 atctcaaaaattc 9321808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 211
Target Start/End: Original strand, 11986743 - 11986925
Alignment:
Q  26 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 125  Q
    |||||||||||||||||||||    | ||||||||||||||||||| ||||| ||| |||| ||||||||| |||| ||||| | ||| |||| ||| ||    
T  11986743 ccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatct 11986842  T
Q  126 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacca 211  Q
    |||||| | ||| |||   || ||||||||||||||||||||||||||||   || |||| ||||||||||||||| |||||||||    
T  11986843 tcacctcagaaactctgacaacttcaacctcatcctccgtcacaacacca---atctctatcaactccatttccctaacctaacca 11986925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 9292862 - 9292745
Alignment:
Q  23 tcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaa 122  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||| | ||  ||||  ||    
T  9292862 tcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaa 9292763  T
Q  123 ccttcacctaaaaaattc 140  Q
    ||||||||| ||||||||    
T  9292762 ccttcacctcaaaaattc 9292745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 8572722 - 8572833
Alignment:
Q  28 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 127  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||  |||||||||| | ||| |||| ||||||||    
T  8572722 gaaatcttctcccgcataccagtaaa-tcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttc 8572820  T
Q  128 acctaaaaaattc 140  Q
    |||| ||||||||    
T  8572821 acctcaaaaattc 8572833  T

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Target: chr2; HSP #18
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 9358051 - 9357935
Alignment:
Q  22 ctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatca 121  Q
    |||||| |||| || | ||||||||| ||||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||| | ||| ||||| |    
T  9358051 ctcgccaaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataa 9357952  T
Q  122 accttcacctaaaaaat 138  Q
    |||||||||| ||||||    
T  9357951 accttcacctcaaaaat 9357935  T

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Target: chr2; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 7612825 - 7612697
Alignment:
Q  28 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 127  Q
    |||||| |||| |||||||||||| || | || ||||||||||||||||  || ||||| |||||||||||||| ||||| | ||| ||||  |||||||    
T  7612825 gaaatcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttc 7612726  T
Q  128 acctaaaaaattctctaaatttcaacctc 156  Q
    |||| ||||| ||| ||||||||||||||    
T  7612725 acctcaaaaactctttaaatttcaacctc 7612697  T

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Target: chr2; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 17565334 - 17565514
Alignment:
Q  28 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 127  Q
    |||||| |||| |||||||| ||| |||| || |||||| |||||||||| || |||||||||||||  ||||| ||||| |  || |||| ||||||||    
T  17565334 gaaatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttc 17565433  T
Q  128 acctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaa 212  Q
    |||  ||||| ||| |||||||||||||||| ||||| |||||| |||   | ||||||||| |  |||||||| ||||||||||    
T  17565434 acc-caaaaactctttaaatttcaacctcattctccgccacaactcca---aattctaccaagttgatttccctaacctaaccaa 17565514  T

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Target: chr2; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 9365494 - 9365445
Alignment:
Q  58 cttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattc 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattc 9365445  T

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Target: chr2; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 14551215 - 14551140
Alignment:
Q  61 ctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaa 136  Q
    |||| |||||||||||| |||||||||||| ||||| |||||||||| | ||| |||||||| |||||||||||||    
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctaaaaa 14551140  T

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Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 8578752 - 8578824
Alignment:
Q  35 tctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattc 107  Q
    ||||||||||||||||| |||| |||||||||||||||||||  || |||||||||  |||||| || |||||    
T  8578752 tctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattc 8578824  T

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Target: scaffold0667 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 5394 - 5276
Alignment:
Q  22 ctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatca 121  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| | ||| |||||||    
T  5394 ctcgcagaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatca 5295  T
Q  122 accttcacctaaaaaattc 140  Q
    |||||||||  ||||||||    
T  5294 accttcaccgcaaaaattc 5276  T

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Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 26575818 - 26575696
Alignment:
Q  18 aattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattc 117  Q
    ||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||   |||||||    
T  26575818 aattctcaccgaaatcttctcccgtttaccggtaatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattc 26575719  T
Q  118 atcaaccttcacctaaaaaattc 140  Q
    |||||||||||||| | ||||||    
T  26575718 atcaaccttcacctcagaaattc 26575696  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 562066 - 561965
Alignment:
Q  61 ctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctcatcc 160  Q
    ||||||||||||| ||  |||||||  ||||||||| |||||||||| | ||| ||||  ||||||||||| ||||| || || ||||| ||||||||||    
T  562066 ctccgattccgattaagttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaactccctcaattttaacctcatcc 561967  T
Q  161 tc 162  Q
    ||    
T  561966 tc 561965  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 37463457 - 37463341
Alignment:
Q  22 ctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatca 121  Q
    |||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| |||||||    
T  37463457 ctcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatca 37463358  T
Q  122 accttcacctaaaaaat 138  Q
    ||||||| || ||||||    
T  37463357 accttcatctcaaaaat 37463341  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 211
Target Start/End: Complemental strand, 39428809 - 39428633
Alignment:
Q  26 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 125  Q
    |||||||| ||||||||||||||||  |||| || |||| |||||||||||| ||||||| | |||||||||||||| |||| | ||| ||||     ||    
T  39428809 ccgaaatcctctcccgcttaccggtgcaatccctcctccaattccgatcaacttcaaaatgagttaaatccttaatc-attcccacaacttca-----ct 39428716  T
Q  126 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacca 211  Q
    |||||| ||||| |  || || |||||||||||||| || ||||||  ||   || ||||||||||| |||||||| |||||||||    
T  39428715 tcacctcaaaaactacctcaacttcaacctcatccttcgccacaactgca---atctctaccaactcgatttccctaacctaacca 39428633  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 41965936 - 41966045
Alignment:
Q  22 ctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatca 121  Q
    ||||| |||||||||||||  ||||||||||||||| |||||||||||||||||||||| |||||||||  ||||||||||||||| | ||| |||||||    
T  41965936 ctcgctgaaatcttctccctattaccggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatca 41966035  T
Q  122 accttcacct 131  Q
    ||||||||||    
T  41966036 accttcacct 41966045  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 29452586 - 29452683
Alignment:
Q  43 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattc 140  Q
    ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| ||||||||  |||||||    
T  29452586 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattc 29452683  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 29467060 - 29467148
Alignment:
Q  43 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 131  Q
    ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| ||||||||    
T  29467060 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct 29467148  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 29424128 - 29424040
Alignment:
Q  43 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 131  Q
    ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||  |||||||||| | ||  |||||||| ||||||||    
T  29424128 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatctctaatcgattcccacagcttcatcaagcttcacct 29424040  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 29442594 - 29442682
Alignment:
Q  43 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 131  Q
    ||||||| | |||| || ||||||||||| ||||| || ||||||||| ||||| |||||||||| |  || |||||||| ||||||||    
T  29442594 ttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgattcccataacttcatcaaacttcacct 29442682  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 36225681 - 36225571
Alignment:
Q  26 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 125  Q
    |||||||| ||||||||||||  ||  |||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| ||||  || ||    
T  36225681 ccgaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatct 36225582  T
Q  126 tcacctaaaaa 136  Q
    |||||| ||||    
T  36225581 tcacctcaaaa 36225571  T

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