View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5839_low_2 (Length: 695)
Name: NF5839_low_2
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5839_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 558; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 16 - 680
Target Start/End: Complemental strand, 17362498 - 17361847
Alignment:
| Q |
16 |
ataataagaatagaagagcagtataagaaaaaatcatgcattcataagaatagttttcttgtagcataagttggatgagaaatccaatataatgcattcc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17362498 |
ataataagaatagaagagcagtataagaaaaaat--------------aatagttttcttgtagcataagttggatgagaaatccaatataatgcattca |
17362413 |
T |
|
| Q |
116 |
taaagttcaagccacccacgacaccatctcacattagaaacatggcgatatcaaactctcaacgtaaacttca-cgttatcgtccttccccaaattgaat |
214 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
17362412 |
taaagttcaagccacccacaacaccatctcacattagaaacatggcgatatcaaactctcaacgtaaacttcagcgttatcgtcctttcccaaattgaat |
17362313 |
T |
|
| Q |
215 |
attgcattaggaccatcgatgttttgaatctgtggaaacttaaaagtaccatttttgaaatcacaaacgtccaaacatcctccgtatgtatattccatta |
314 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17362312 |
attgcattaggaccatcgatgttttgaatctttggaaacttaaaagtaccatttttgaaatcacaaacggccaaacatcctccgtatgtatattccatta |
17362213 |
T |
|
| Q |
315 |
gaacttggtcttcctcggaaatccataatgggtaggtggtttttgcattagtgaaaggattgacttccatgtaaggaacacgaaataatttagtccaaga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17362212 |
gaacttggtcttcctcggaaatccataatgggtaggtggtttttgcattagtgaaaggatcgacttccatgtaaggaacacgaaataatttagtccaaga |
17362113 |
T |
|
| Q |
415 |
cccttcgtttccgtactccttcatcagccaagcatcaaaaaatgnnnnnnnacatgcaaagatacacaaacaatttcttgacacacccaagatcacttta |
514 |
Q |
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| T |
17362112 |
cccttcgtttccgtactccttcatcagccaagcatcaaaaaatgtttttttacatgcaaagatacacaaacaatttcttgagacacccaagatcacttta |
17362013 |
T |
|
| Q |
515 |
tacacatcttccactccatagttaggctgcaaaagtcttttatacgactcggtcaccaaatcaaaagaatcaacactatgagtataattcttcctatatg |
614 |
Q |
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| T |
17362012 |
tacacatcttccactccatagttaggctgcaaaagtcttttatacgactcggtcaccaaatcaaaagaatcaacactatgagtataatccttcctatatg |
17361913 |
T |
|
| Q |
615 |
gaatccaatgaagcgccccactcgcgaattgcagcgatctgtaatgagcatttggaagagggaact |
680 |
Q |
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| T |
17361912 |
gaatccaatgaagcgccccactcgcgaattgcagcgatctgtaatgagcatttggaagagggaact |
17361847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 378 - 644
Target Start/End: Complemental strand, 17368438 - 17368172
Alignment:
| Q |
378 |
cttccatgtaaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaagcatcaaaaaatgnnnnnnnacatgcaaagat |
477 |
Q |
| |
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|||||| |||||||||| |||| |||||||||||||||||||| ||||| ||||| |||||||||||| |||||||||| || |||||||| |
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| T |
17368438 |
cttccaagtaaggaacatgaaacaatttagtccaagacccttcatttccatactctttcatcagccaaacatcaaaaaacctttgtctactagcaaagat |
17368339 |
T |
|
| Q |
478 |
acacaaacaatttcttgacacacccaagatcactttatacacatcttccactccatagttaggctgcaaaagtcttttatacgactcggtcaccaaatca |
577 |
Q |
| |
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|| |||||||| || || ||| ||||| ||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17368338 |
acgcaaacaatccctcgagacatccaagttcaaattatacacaaattccgctccatagttaggctgcaaaagtcttttatacgactcagtcaccaaatca |
17368239 |
T |
|
| Q |
578 |
aaagaatcaacactatgagtataattcttcctatatggaatccaatgaagcgccccactcgcgaatt |
644 |
Q |
| |
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|||||| ||| ||||||| ||||||||||| |||||||||||||| ||||| |||||| |||||| |
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| T |
17368238 |
aaagaagcaagactatgaatataattcttcaaatatggaatccaattcagcgcaccactcacgaatt |
17368172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 378 - 445
Target Start/End: Complemental strand, 19119135 - 19119068
Alignment:
| Q |
378 |
cttccatgtaaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaa |
445 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||| |||| ||||| || |||||||||| |||| |
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|
| T |
19119135 |
cttccatgtaaggaacatgaaacaatttagtccaagactcttcatttccatattccttcatcaaccaa |
19119068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 378 - 445
Target Start/End: Complemental strand, 19126429 - 19126362
Alignment:
| Q |
378 |
cttccatgtaaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaa |
445 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||| |||| ||||| || |||||||||| |||| |
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| T |
19126429 |
cttccatgtaaggaacatgaaacaatttagtccaagactcttcatttccatattccttcatcaaccaa |
19126362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 17368599 - 17368554
Alignment:
| Q |
232 |
gatgttttgaatctgtggaaacttaaaagtaccatttttgaaatca |
277 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||| |||||| |
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| T |
17368599 |
gatgttatgaatctttggaaacttaaaagtaccattttttaaatca |
17368554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 466 - 589
Target Start/End: Original strand, 23231049 - 23231172
Alignment:
| Q |
466 |
acatgcaaagatacacaaacaatttcttgacacacccaagatcactttatacacatcttccactccatagttaggctgcaaaagtcttttatacgactcg |
565 |
Q |
| |
|
|||||||| |||||||||||||| || | ||||||||| |||| |||| ||||| |||| ||||||| |||||||||||||||||| ||||| |||| |
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| T |
23231049 |
acatgcaaggatacacaaacaatccctcaaaacacccaagttcaccttatgcacatattcccctccataattaggctgcaaaagtcttctatactactca |
23231148 |
T |
|
| Q |
566 |
gtcaccaaatcaaaagaatcaaca |
589 |
Q |
| |
|
||||||||||||||||| ||||| |
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| T |
23231149 |
atcaccaaatcaaaagaaacaaca |
23231172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 386 - 579
Target Start/End: Original strand, 23234853 - 23235045
Alignment:
| Q |
386 |
taaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaagcatcaaaaaatgnnnnnnnacatgcaaagatacacaaac |
485 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || ||||||| || || |||||||||||| || | |||| |||||||| | ||||||||| |
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|
| T |
23234853 |
taaggaacacgaaacaatttagtccaagactctacgtttccatattctttcatcagccaaacactagaaaaaccgggactacatgcaatg-tacacaaac |
23234951 |
T |
|
| Q |
486 |
aatttcttgacacacccaagatcactttatacacatcttccactccatagttaggctgcaaaagtcttttatacgactcggtcaccaaatcaaa |
579 |
Q |
| |
|
| ||||| |||||||| |||| |||| || || |||| ||||||| |||||| ||||||||||| |||||||||| ||||||||||||| |
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|
| T |
23234952 |
agccccttgaaacacccaaattcaccttatccaaatattcccctccataattaggcagcaaaagtcttctatacgactcaatcaccaaatcaaa |
23235045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 475 - 591
Target Start/End: Original strand, 23239573 - 23239689
Alignment:
| Q |
475 |
gatacacaaacaatttcttgacacacccaagatcactttatacacatcttccactccatagttaggctgcaaaagtcttttatacgactcggtcaccaaa |
574 |
Q |
| |
|
|||||||||||||| || | ||||||||| ||| ||| ||||| ||| ||||||| ||||||||||||||| || ||||| |||| |||||||| |
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|
| T |
23239573 |
gatacacaaacaatccctcaagacacccaagtccacactatgcacatactcccctccataattaggctgcaaaagtgttctatactactcaatcaccaaa |
23239672 |
T |
|
| Q |
575 |
tcaaaagaatcaacact |
591 |
Q |
| |
|
||||||||| ||||||| |
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|
| T |
23239673 |
tcaaaagaaacaacact |
23239689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 383 - 445
Target Start/End: Complemental strand, 23197079 - 23197017
Alignment:
| Q |
383 |
atgtaaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaa |
445 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| |||| ||||| || ||||||||||||||| |
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|
| T |
23197079 |
atgtaaggaatacgaaacaatttagtccaagattcttcatttccatattccttcatcagccaa |
23197017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 7398164 - 7398225
Alignment:
| Q |
384 |
tgtaaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaa |
445 |
Q |
| |
|
|||||| ||||| ||| |||||| |||||||| |||| ||||| ||||||||||||| |||| |
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|
| T |
7398164 |
tgtaagaaacacaaaacaatttaatccaagactcttcatttccatactccttcatcaaccaa |
7398225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 388 - 456
Target Start/End: Original strand, 768318 - 768386
Alignment:
| Q |
388 |
aggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaagcatcaaaaaa |
456 |
Q |
| |
|
||||||| | || ||||||||||||||| |||| ||||||||||| ||||| | |||| ||| |||||| |
|
|
| T |
768318 |
aggaacatggaacaatttagtccaagactcttcatttccgtactcattcataatccaaacattaaaaaa |
768386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 23197292 - 23197248
Alignment:
| Q |
144 |
tcacattagaaacatggcgatatcaaactctcaacgtaaacttca |
188 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||| |||||||| |
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| T |
23197292 |
tcacattagaaacaaggtgatatcaaactctcaacacaaacttca |
23197248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 7156174 - 7156243
Alignment:
| Q |
381 |
ccatgtaaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaagcatc |
450 |
Q |
| |
|
|||||||||||||||| || ||||||| |||||| |||| ||||| ||||||||||| |||||| |||| |
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|
| T |
7156174 |
ccatgtaaggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaacatc |
7156243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 456
Target Start/End: Complemental strand, 33038232 - 33038154
Alignment:
| Q |
378 |
cttccatgtaaggaacacgaaataatttagtccaagacccttcgtttccgtactccttcatcagccaagcatcaaaaaa |
456 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||||| || |||||| || |||||||| | |||| |||||||||| |
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| T |
33038232 |
cttccatgtaaggaacacggtacaatctagtccaagactttttgtttccatattccttcataatccaaacatcaaaaaa |
33038154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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