View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5839_low_20 (Length: 316)

Name: NF5839_low_20
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5839_low_20
NF5839_low_20
[»] chr4 (1 HSPs)
chr4 (1-316)||(1158529-1158828)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 1158529 - 1158828
Alignment:
Q  1 taattcaaaatctgggagctttttcttgacgtatattaacaacattttcaaacagaatattttatattctttgacctcattttcattaacttgtggacaa 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1158529 taattcaaaatctgggagctttatcttgacgtatattaacaacattttcaaacagaatattttatattctttgacctcattttcattaacttgtggacaa 1158628  T
Q  101 tgccgccattaacatttcattaacttgttttgcaaattattgtagtaggagtacatcaaaactgtgaactcatgtaagttaccacccttcttctgatttt 200  Q
    ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1158629 tgcc---attaacatttcattaacttgttttgcaaattattgtagtaggagtacatcaaaactgtgaactcatgtaagttaccacccttcttctgatttt 1158725  T
Q  201 ctttgaataacaaatccttgttttgtaccacatatgaggtaccttgtagagtacatcggaccgctgattaaaaacacgaatgttaattgtatatgttctt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||           |   ||||||||||||||||||||||||||||||||||||    
T  1158726 ctttgaataacaaatccttgttttgtaccacatatgaggtacct--tag-----------cttgtgattaaaaacacgaatgttaattgtatatgttctt 1158812  T

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