View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5839_low_22 (Length: 269)
Name: NF5839_low_22
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5839_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 1747224 - 1746981
Alignment:
| Q |
1 |
tattagcggtgtcggcgtgtaagtgttcggtgtccttgcttcattgattgaaactagnnnnnnnctttgaaaatgccaacttagattttctgtatttgat |
100 |
Q |
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| T |
1747224 |
tattagcggtgtcggcgtgtaagtgctcggtgtccttgcttcattgattgaaactagtttttttctttgaaaatgccaacttag--------tatttgat |
1747133 |
T |
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| Q |
101 |
tattactctatgcaccataatttcctagtaatcttgtatgttaagatttttatataatgtgcaatataatgcaattagttatgtgttatacaaagttata |
200 |
Q |
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| T |
1747132 |
tattactctatgcaccataatttcctagtaatcttgtatggtaagatttttatataaggtgcaatataatgcaattagttatgtgttatacaaagttata |
1747033 |
T |
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| Q |
201 |
aattacattgtttttctttgctttcccttgaattgtatcatctggatttgat |
252 |
Q |
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| T |
1747032 |
aattacattgtttttctttgctttcccttgaattgtatcatctggatttgat |
1746981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 252
Target Start/End: Complemental strand, 6006005 - 6005819
Alignment:
| Q |
65 |
ctttgaaaatgccaacttagattttctgtatttgattattactctatgcaccataatttcctagtaatcttgtatgttaagatttttatataatgtgcaa |
164 |
Q |
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| T |
6006005 |
ctttgaaaatgtcaacttagatttgttgtatatgtttgtcaccctgtgcatcataattgccaattaattgtgtatggtaacatatttatataatgcacaa |
6005906 |
T |
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| Q |
165 |
tataatgcaattagttatgtgttatacaaagttataaattacattgtttttctttgctttcccttgaattgtatcatctggatttgat |
252 |
Q |
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| T |
6005905 |
tgtaatataacaagttgggtgttatacatcgttttaaattatatagtttt-cttcactttcccttgaattatatcatctggacttgat |
6005819 |
T |
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