View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5839_low_23 (Length: 265)

Name: NF5839_low_23
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5839_low_23
NF5839_low_23
[»] chr6 (5 HSPs)
chr6 (18-265)||(7996111-7996358)
chr6 (18-265)||(8022443-8022690)
chr6 (232-265)||(10649371-10649404)
chr6 (232-265)||(31385013-31385046)
chr6 (232-264)||(13360316-13360348)
[»] chr4 (2 HSPs)
chr4 (232-265)||(30982810-30982843)
chr4 (232-265)||(36635413-36635446)
[»] chr3 (2 HSPs)
chr3 (232-265)||(15864915-15864948)
chr3 (232-265)||(5407202-5407235)
[»] chr7 (3 HSPs)
chr7 (225-265)||(8842275-8842315)
chr7 (231-265)||(4909954-4909988)
chr7 (232-265)||(9778588-9778621)
[»] chr5 (2 HSPs)
chr5 (236-265)||(21522844-21522873)
chr5 (236-265)||(21533410-21533439)
[»] chr2 (1 HSPs)
chr2 (232-265)||(18255947-18255980)
[»] chr1 (3 HSPs)
chr1 (232-265)||(15765841-15765874)
chr1 (232-265)||(34741929-34741962)
chr1 (232-265)||(48415669-48415702)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 7996111 - 7996358
Alignment:
Q  18 agattaatgttggaaacaaagatattagagcattaactgctgataattggcctctcgaagcagctacatgtaaagcagtgtttccttgatgatctgttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7996111 agattaatgttggaaacaaagatattagagcattaactgctgataattggcctctcgaagcagctacatgtaaagcagtgtttccttgatgatctgttga 7996210  T
Q  118 gttgattatgtcaaaggatgatgctagatatttaaccacctgcattttgagattcatgaacaatttatgagtaccatgagactcaaatagattgtaattc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  7996211 gttgattatgtcaaaggatgatgctagatatttaaccacctgcattttgagattcatgaacaagttcggagtaccatgagactcaaatagattgtaattc 7996310  T
Q  218 aactgagatcaaagtgaagcacggacactctttggattaggcgtgtcc 265  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  7996311 aactgagatcaaagtgaagcacggagactccttggattaggcgtgtcc 7996358  T

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Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 8022690 - 8022443
Alignment:
Q  18 agattaatgttggaaacaaagatattagagcattaactgctgataattggcctctcgaagcagctacatgtaaagcagtgtttccttgatgatctgttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8022690 agattaatgttggaaacaaagatattagagcattaactgctgataattggcctctcgaagcagctacatgtaaagcagtgtttccttgatgatctgttga 8022591  T
Q  118 gttgattatgtcaaaggatgatgctagatatttaaccacctgcattttgagattcatgaacaatttatgagtaccatgagactcaaatagattgtaattc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  8022590 gttgattatgtcaaaggatgatgctagatatttaaccacctgcattttgagattcatgaacaagttcggagtaccatgagactcaaatagattgtaattc 8022491  T
Q  218 aactgagatcaaagtgaagcacggacactctttggattaggcgtgtcc 265  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  8022490 aactgagatcaaagtgaagcacggagactccttggattaggcgtgtcc 8022443  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 10649404 - 10649371
Alignment:
Q  232 tgaagcacggacactctttggattaggcgtgtcc 265  Q
    |||||||||||||||| |||||||||||||||||    
T  10649404 tgaagcacggacactccttggattaggcgtgtcc 10649371  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 31385046 - 31385013
Alignment:
Q  232 tgaagcacggacactctttggattaggcgtgtcc 265  Q
    |||||||||||||||| |||||||||||||||||    
T  31385046 tgaagcacggacactccttggattaggcgtgtcc 31385013  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 13360316 - 13360348
Alignment:
Q  232 tgaagcacggacactctttggattaggcgtgtc 264  Q
    |||||||||||||||||| ||||||||||||||    
T  13360316 tgaagcacggacactcttcggattaggcgtgtc 13360348  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 30982810 - 30982843
Alignment:
Q  232 tgaagcacggacactctttggattaggcgtgtcc 265  Q
    ||||||||||||||||||||||||||||||||||    
T  30982810 tgaagcacggacactctttggattaggcgtgtcc 30982843  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 36635446 - 36635413
Alignment:
Q  232 tgaagcacggacactctttggattaggcgtgtcc 265  Q
    |||||||||||||||||| |||||||||||||||    
T  36635446 tgaagcacggacactcttcggattaggcgtgtcc 36635413  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 15864948 - 15864915
Alignment:
Q  232 tgaagcacggacactctttggattaggcgtgtcc 265  Q
    ||||||||||||||||||||||||||||||||||    
T  15864948 tgaagcacggacactctttggattaggcgtgtcc 15864915  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 5407202 - 5407235
Alignment:
Q  232 tgaagcacggacactctttggattaggcgtgtcc 265  Q
    ||||||| ||||||||||||||||||||||||||    
T  5407202 tgaagcatggacactctttggattaggcgtgtcc 5407235  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 8842275 - 8842315
Alignment:
Q  225 atcaaagtgaagcacggacactctttggattaggcgtgtcc 265  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  8842275 atcaatgtgaagcacggacactccttggattaggcgtgtcc 8842315  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 4909988 - 4909954
Alignment:
Q  231 gtgaagcacggacactctttggattaggcgtgtcc 265  Q
    ||||| |||||||||||||||||||||||||||||    
T  4909988 gtgaaacacggacactctttggattaggcgtgtcc 4909954  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 9778621 - 9778588
Alignment:
Q  232 tgaagcacggacactctttggattaggcgtgtcc 265  Q
    |||||||||||||||| |||||||||||||||||    
T  9778621 tgaagcacggacactccttggattaggcgtgtcc 9778588  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 265
Target Start/End: Complemental strand, 21522873 - 21522844
Alignment:
Q  236 gcacggacactctttggattaggcgtgtcc 265  Q
    ||||||||||||||||||||||||||||||    
T  21522873 gcacggacactctttggattaggcgtgtcc 21522844  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 265
Target Start/End: Complemental strand, 21533439 - 21533410
Alignment:
Q  236 gcacggacactctttggattaggcgtgtcc 265  Q
    ||||||||||||||||||||||||||||||    
T  21533439 gcacggacactctttggattaggcgtgtcc 21533410  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 18255947 - 18255980
Alignment:
Q  232 tgaagcacggacactctttggattaggcgtgtcc 265  Q
    |||||||||||||||| |||||||||||||||||    
T  18255947 tgaagcacggacactccttggattaggcgtgtcc 18255980  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 15765874 - 15765841
Alignment:
Q  232 tgaagcacggacactctttggattaggcgtgtcc 265  Q
    |||||||||||||||||| |||||||||||||||    
T  15765874 tgaagcacggacactcttcggattaggcgtgtcc 15765841  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 34741962 - 34741929
Alignment:
Q  232 tgaagcacggacactctttggattaggcgtgtcc 265  Q
    |||||||||||||||||| |||||||||||||||    
T  34741962 tgaagcacggacactcttcggattaggcgtgtcc 34741929  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 48415669 - 48415702
Alignment:
Q  232 tgaagcacggacactctttggattaggcgtgtcc 265  Q
    |||||||||||||||| |||||||||||||||||    
T  48415669 tgaagcacggacactccttggattaggcgtgtcc 48415702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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