View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5839_low_25 (Length: 245)
Name: NF5839_low_25
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5839_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 29911708 - 29911938
Alignment:
| Q |
1 |
cattttttcacaccctcatgatgggg-ttttagcccttattgattcttcatctgggtcttccatttcttactcaaagttgttacctttagtcaaatccat |
99 |
Q |
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| T |
29911708 |
cattttttcacactctcatgatgggggttttagcccttattgattcttcatctgggtcttccatttcttactcaaagttgttacctttagtcaaatccat |
29911807 |
T |
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| Q |
100 |
ggcttctgctttacacaaaatgggtgtttcacaaggtgatgttgttttgcttctacttccaaattcaatttattaccctgttatactattggctgttctg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29911808 |
ggcttctgctttacacaaaatgggtgtttcacaaggtgatgttgttttgcttctacttccaaattcaatttattaccctgttatactattggctgttctg |
29911907 |
T |
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| Q |
200 |
tatttaggtgctgtttttacaccattgaatc |
230 |
Q |
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| T |
29911908 |
tatttaggtgctgtttttacaccattgaatc |
29911938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11453109 - 11452880
Alignment:
| Q |
1 |
cattttttcacaccctcatgatggggttttagcccttattgattcttcatctgggtcttccatttcttactcaaagttgttacctttagtcaaatccatg |
100 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| |||||||||||||| || |
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| T |
11453109 |
cattttttctcaccctcatgacggggttttagcccttattgattcctcatctgggacttccatttcttactcaaatttgttaactttagtcaaatccttg |
11453010 |
T |
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| Q |
101 |
gcttctgctttacacaaaatgggtgtttcacaaggtgatgttgttttgcttctacttccaaattcaatttattaccctgttatactattggctgttctgt |
200 |
Q |
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| T |
11453009 |
gcttctggtcttcataaaatgggtgtttcacaaggtgatgttgttttgcttttacttccaaattcaatttactatcctattgtactattgagtgttatgt |
11452910 |
T |
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| Q |
201 |
atttaggtgctgtttttacaccattgaatc |
230 |
Q |
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| T |
11452909 |
atctaggtgctgttgttacaccattgaatc |
11452880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 11442536 - 11442307
Alignment:
| Q |
1 |
cattttttcacaccctcatgatggggttttagcccttattgattcttcatctgggtcttccatttcttactcaaagttgttacctttagtcaaatccatg |
100 |
Q |
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||||||||| || |||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||||||||| |||||| |||||||||||||| || |
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| T |
11442536 |
cattttttctcatcctcatgacggggttttagcccttattgattccttatctgggacttccatttcttactcaaatttgttaactttagtcaaatccttg |
11442437 |
T |
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| Q |
101 |
gcttctgctttacacaaaatgggtgtttcacaaggtgatgttgttttgcttctacttccaaattcaatttattaccctgttatactattggctgttctgt |
200 |
Q |
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| T |
11442436 |
gcttctggtcttcataaaatgggtgtttcacaaggtgatgttgttttgcttttacttcccaattcaatttactatcctattgcattattgagtgttatgt |
11442337 |
T |
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| Q |
201 |
atttaggtgctgtttttacaccattgaatc |
230 |
Q |
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|| ||||||||||| ||||||||||||||| |
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| T |
11442336 |
atctaggtgctgttgttacaccattgaatc |
11442307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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