View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5839_low_3 (Length: 582)

Name: NF5839_low_3
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5839_low_3
NF5839_low_3
[»] chr1 (7 HSPs)
chr1 (6-508)||(28079687-28080189)
chr1 (243-313)||(41092669-41092739)
chr1 (226-305)||(42606287-42606366)
chr1 (226-307)||(3400010-3400091)
chr1 (251-304)||(27120882-27120935)
chr1 (243-312)||(41087928-41087997)
chr1 (534-566)||(28079629-28079661)
[»] chr8 (2 HSPs)
chr8 (212-307)||(38810102-38810197)
chr8 (213-305)||(33933511-33933603)
[»] chr7 (2 HSPs)
chr7 (62-128)||(10041520-10041586)
chr7 (243-307)||(47405107-47405171)
[»] chr5 (1 HSPs)
chr5 (251-313)||(5539099-5539161)
[»] chr4 (1 HSPs)
chr4 (226-307)||(20634512-20634593)
[»] chr2 (1 HSPs)
chr2 (243-312)||(28388705-28388774)
[»] chr3 (3 HSPs)
chr3 (239-312)||(13411407-13411480)
chr3 (242-310)||(7851118-7851186)
chr3 (226-307)||(20000093-20000174)
[»] chr6 (1 HSPs)
chr6 (251-312)||(22749247-22749308)


Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 6 - 508
Target Start/End: Complemental strand, 28080189 - 28079687
Alignment:
Q  6 agtgagatgaacaatcaagccgatctaggcatgctgcacggtggaattgagtttgacatgttgaattgtggagctgaactaggcatgatctgaatggtca 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  28080189 agtgacatgaacaatcaagccgatctaggcatgctgcacggtggaattgagcttgacatgttgaattgtagagctgaactaggcatgacctgaatggtca 28080090  T
Q  106 agatgagctagtcatactgaaggatgaagctgagttagacatgactgaatggtcaagctgagttaggaatgacctaaatggtcaagctgggctagacatg 205  Q
    ||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28080089 agatgagctagtcataccgaaggatgaagctgagctaggcatgactgaatggtcaagctgagttaggaatgacctaaatggtcaagctgagctagacatg 28079990  T
Q  206 ctaaaggatggagctcgtgcgacctgaacggttaaactgagctggacatattgaatagtcaatatacagtagagtccacgtggtatggttctccatacca 305  Q
    |||||||||| |||||||| ||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28079989 ctaaaggatgaagctcgtgtgacctgaacggttaagctgaactagacatattgaatagtcaatatacagtagagtccaagtggtatggttctccatacca 28079890  T
Q  306 gttcacaagtgatgtaccaactcgagcccttccctctggataaaaagttaactactgcattaacnnnnnnnnnnnaagacactgatgcattaacttggta 405  Q
    || |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||           |||||||||||||||||||||||||    
T  28079889 gtccacaagtgatataccaactcgagcccttccctctagataaaaagttaactactgcattaactcattttttttaagacactgatgcattaacttggta 28079790  T
Q  406 catagtatgcgtcacaaagtaatttattacggaacttggtgtgaaggtgtgatttttggaatgttggtatcggtttctataatcattgacttgagattcc 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28079789 catagtatgcgtcacaaagtaatttattacggaacttggtgtgaaggtgtgatttttggaatgttggtatcggtttctatcatcattgacttgagattcc 28079690  T
Q  506 ttc 508  Q
    |||    
T  28079689 ttc 28079687  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 41092669 - 41092739
Alignment:
Q  243 tgagctggacatattgaatagtcaatatacagtagagtccacgtggtatggttctccataccagttcacaa 313  Q
    |||||||||||| ||||||||||||| || |||| |||||| |||||||||| ||| |||||||| |||||    
T  41092669 tgagctggacatgttgaatagtcaatgtatagtaaagtccatgtggtatggtcctctataccagtccacaa 41092739  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 42606366 - 42606287
Alignment:
Q  226 gacctgaacggttaaactgagctggacatattgaatagtcaatatacagtagagtccacgtggtatggttctccatacca 305  Q
    |||||||||| | ||  |||| || |||||||||||||||||| || || ||||||||||||||||||| ||| ||||||    
T  42606366 gacctgaacgatcaagttgagttgtacatattgaatagtcaatgtataggagagtccacgtggtatggtcctctatacca 42606287  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 3400091 - 3400010
Alignment:
Q  226 gacctgaacggttaaactgagctggacatattgaatagtcaatatacagtagagtccacgtggtatggttctccataccagt 307  Q
    |||||||||| | || || || || |||| ||||||||||||| || |  ||||||||||||||||||| ||||||||||||    
T  3400091 gacctgaacgatcaagctaagttgtacatgttgaatagtcaatgtatataagagtccacgtggtatggtcctccataccagt 3400010  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 27120935 - 27120882
Alignment:
Q  251 acatattgaatagtcaatatacagtagagtccacgtggtatggttctccatacc 304  Q
    |||| ||||||||||||| || || ||||||||||||||||||| |||||||||    
T  27120935 acatgttgaatagtcaatgtaaaggagagtccacgtggtatggtcctccatacc 27120882  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 41087928 - 41087997
Alignment:
Q  243 tgagctggacatattgaatagtcaatatacagtagagtccacgtggtatggttctccataccagttcaca 312  Q
    |||| ||||||| ||||||||||||| || |||| |||||| |||||||||| ||| |||||||| ||||    
T  41087928 tgagttggacatgttgaatagtcaatgtatagtaaagtccatgtggtatggtcctctataccagtccaca 41087997  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 534 - 566
Target Start/End: Complemental strand, 28079661 - 28079629
Alignment:
Q  534 cattgcaaccattttgtagaattaagtagatat 566  Q
    |||||||||||||||||||||||||||||||||    
T  28079661 cattgcaaccattttgtagaattaagtagatat 28079629  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 38810102 - 38810197
Alignment:
Q  212 gatggagctcgtgcgacctgaacggttaaactgagctggacatattgaatagtcaatatacagtagagtccacgtggtatggttctccataccagt 307  Q
    ||||||||||  | |||||||||| | ||  ||||||| |||| ||||||||||||| || || |||||||||||| |||||| ||||||||||||    
T  38810102 gatggagctcacgtgacctgaacgatcaagttgagctgtacatgttgaatagtcaatgtataggagagtccacgtgatatggtcctccataccagt 38810197  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 33933511 - 33933603
Alignment:
Q  213 atggagctcgtgcgacctgaacggttaaactgagctggacatattgaatagtcaatatacagtagagtccacgtggtatggttctccatacca 305  Q
    ||||||||| || |||||||||| | |||| |||||   ||||| | ||||||||| || || |||||||||||||||||||| |||||||||    
T  33933511 atggagctcatgtgacctgaacgatcaaaccgagcttagcatatggtatagtcaatgtataggagagtccacgtggtatggttttccatacca 33933603  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 10041586 - 10041520
Alignment:
Q  62 catgttgaattgtggagctgaactaggcatgatctgaatggtcaagatgagctagtcatactgaagg 128  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||| | |||||| ||| |||||||    
T  10041586 catgttgaattgtggagttgagttaggcatgatctgaatggtcaagttaagctagacatgctgaagg 10041520  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 47405107 - 47405171
Alignment:
Q  243 tgagctggacatattgaatagtcaatatacagtagagtccacgtggtatggttctccataccagt 307  Q
    ||||||||| || ||||||||||||| || |||| ||| || |||||||||| ||| ||||||||    
T  47405107 tgagctggatatgttgaatagtcaatgtatagtaaagttcatgtggtatggtcctctataccagt 47405171  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 5539099 - 5539161
Alignment:
Q  251 acatattgaatagtcaatatacagtagagtccacgtggtatggttctccataccagttcacaa 313  Q
    |||| ||||||||||||| || || ||||||||||||||||||| |||||||||||| |||||    
T  5539099 acatgttgaatagtcaatgtataggagagtccacgtggtatggtcctccataccagtccacaa 5539161  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 20634593 - 20634512
Alignment:
Q  226 gacctgaacggttaaactgagctggacatattgaatagtcaatatacagtagagtccacgtggtatggttctccataccagt 307  Q
    |||||||||| | |||||||| || |||| ||||||| ||||| || || |||||||| |||||||||| ||||||||||||    
T  20634593 gacctgaacgatcaaactgagttgtacatgttgaatattcaatgtataggagagtccatgtggtatggtcctccataccagt 20634512  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 28388774 - 28388705
Alignment:
Q  243 tgagctggacatattgaatagtcaatatacagtagagtccacgtggtatggttctccataccagttcaca 312  Q
    |||||| |||||||||||||||||||||| | || | |||| |||||||||| ||| |||||||||||||    
T  28388774 tgagctagacatattgaatagtcaatatataataaaatccatgtggtatggtcctctataccagttcaca 28388705  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 13411407 - 13411480
Alignment:
Q  239 aaactgagctggacatattgaatagtcaatatacagtagagtccacgtggtatggttctccataccagttcaca 312  Q
    |||||||| || |||  |||| ||||||||||| || ||||||||||||||||| | |||||||||||| ||||    
T  13411407 aaactgagttgtacacgttgattagtcaatatataggagagtccacgtggtatgatcctccataccagtccaca 13411480  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 7851118 - 7851186
Alignment:
Q  242 ctgagctggacatattgaatagtcaatatacagtagagtccacgtggtatggttctccataccagttca 310  Q
    |||||||  |||| ||||||||||||| || || ||||||||||||| ||| ||||||||| |||||||    
T  7851118 ctgagctatacatgttgaatagtcaatctataggagagtccacgtggcatgattctccatatcagttca 7851186  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 20000174 - 20000093
Alignment:
Q  226 gacctgaacggttaaactgagctggacatattgaatagtcaatatacagtagagtccacgtggtatggttctccataccagt 307  Q
    |||||||||| | ||  |||| || |||| ||||||||||||| || |   |||||||||||||||||| ||||||||||||    
T  20000174 gacctgaacgatcaagttgagttgtacatgttgaatagtcaatgtatataggagtccacgtggtatggtcctccataccagt 20000093  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 22749247 - 22749308
Alignment:
Q  251 acatattgaatagtcaatatacagtagagtccacgtggtatggttctccataccagttcaca 312  Q
    |||| |||||||||||||||| |  |||||||||||| |||||| |||||||| ||| ||||    
T  22749247 acatgttgaatagtcaatataaaagagagtccacgtgatatggtcctccatactagtccaca 22749308  T

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