View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5839_low_31 (Length: 229)
Name: NF5839_low_31
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5839_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 47193898 - 47194095
Alignment:
| Q |
13 |
catcatcatcgaatggtgagttgggtgatggaaaaggtgaaaagtgcacctacgactatgttttggattgaagagattgttgatggtaatttggaaggaa |
112 |
Q |
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| T |
47193898 |
catcatcatcgaatggtgagttgggtgatggaaaaggtgaaaagtgcacctacgactatgttttggattgaagagattgttgatggtaatttggaaggaa |
47193997 |
T |
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| Q |
113 |
aatatgatgttaatcaggttgagaatttggttaaagtggctttgatgtgtgtgaaagatgacatgaatgaaagaccatccatgagtcaagtagtggag |
210 |
Q |
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| T |
47193998 |
aatatgatgttaatcaggttgagaatttggttaaagtggctttgatgtgtgtgaaagatgacatgaatgaaagaccatccatgagtcaagtagtggag |
47194095 |
T |
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