View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5839_low_7 (Length: 449)
Name: NF5839_low_7
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5839_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 239 - 394
Target Start/End: Complemental strand, 175798 - 175643
Alignment:
| Q |
239 |
aaattgagcgtgaggcgggttttactgaaatatggaatgggaaatgagtgcttcgttgttacagaatttgaagttacacgatccatggcttcctccaaac |
338 |
Q |
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| T |
175798 |
aaattgagcgtgaggcgggttttactgaaatatggaatgggaaatgagtgcttcgttgttacagaatttgaagttacacgatccatggcttcctccaaac |
175699 |
T |
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| Q |
339 |
acttgggaacaacgaacacaaacaccccttcttcctcttcaattatcttcaaattc |
394 |
Q |
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| T |
175698 |
acttgggaacaacgaacaccaacaccccttcttcctcttcaattatcttcaaattc |
175643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 175973 - 175794
Alignment:
| Q |
14 |
atatatcggaaaataaagttaattagttcaaagttttgttaatatacaaatctctnnnnnnnnnnnnnnnngactttataatcgaaggattaatgtatct |
113 |
Q |
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| T |
175973 |
atatataggaaaataaagttaattagttcaaagttttgttaatatacaaatctctaaaaaaaaact-----gactttataatcgaaggattaatgtattt |
175879 |
T |
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| Q |
114 |
tgattctaaattcnnnnnnn-tgttgtgaagagaagaagaacccagtgagtgacatggagtaaagtaaagttgttcttgcaaatt |
197 |
Q |
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| T |
175878 |
tgattctaaattctaaaaaaatgttgtgaagagaagaagaacccagtgagtgacatggagtaaagtaaagttgttcttgcaaatt |
175794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 175633 - 175581
Alignment:
| Q |
386 |
ttcaaattcaaatcaaaccactctctctgtaagtactaattttcaatttcaat |
438 |
Q |
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| T |
175633 |
ttcaaattcaaatcaaaccactctctctgtaagtactcattttcaatttcaat |
175581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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