View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5840-Insertion-10 (Length: 561)

Name: NF5840-Insertion-10
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5840-Insertion-10
NF5840-Insertion-10
[»] chr1 (7 HSPs)
chr1 (67-561)||(28079687-28080178)
chr1 (265-335)||(41092669-41092739)
chr1 (273-352)||(42606287-42606366)
chr1 (271-352)||(3400010-3400091)
chr1 (274-327)||(27120882-27120935)
chr1 (266-335)||(41087928-41087997)
chr1 (9-41)||(28079629-28079661)
[»] chr8 (2 HSPs)
chr8 (271-366)||(38810102-38810197)
chr8 (273-365)||(33933511-33933603)
[»] chr7 (2 HSPs)
chr7 (450-516)||(10041520-10041586)
chr7 (271-335)||(47405107-47405171)
[»] chr5 (1 HSPs)
chr5 (265-327)||(5539099-5539161)
[»] chr4 (1 HSPs)
chr4 (271-352)||(20634512-20634593)
[»] chr2 (1 HSPs)
chr2 (266-335)||(28388705-28388774)
[»] chr3 (3 HSPs)
chr3 (266-339)||(13411407-13411480)
chr3 (268-336)||(7851118-7851186)
chr3 (271-352)||(20000093-20000174)
[»] chr6 (1 HSPs)
chr6 (266-327)||(22749247-22749308)


Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 67 - 561
Target Start/End: Original strand, 28079687 - 28080178
Alignment:
Q  67 gaaggaatctcaagtcaatgattatagaaaccgataccaacattccaaaaatcacaccttcacaccaagttccgtaataaattactttgtgacgcatact 166  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28079687 gaaggaatctcaagtcaatgatgatagaaaccgataccaacattccaaaaatcacaccttcacaccaagttccgtaataaattactttgtgacgcatact 28079786  T
Q  167 atgtaccaagttaatgcatcagtgtcttnnnnnnnnnnnnnngttaatgcagtagttaactttttatccagagggaagggctcgagttggtacatcactt 266  Q
    ||||||||||||||||||||||||||||              |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  28079787 atgtaccaagttaatgcatcagtgtcttaaaaaaaatga---gttaatgcagtagttaactttttatctagagggaagggctcgagttggtatatcactt 28079883  T
Q  267 gtgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctcagtttaaccgttcaggtcgcacgagctccatc 366  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| |||||||| ||||    
T  28079884 gtggactggtatggagaaccataccacttggactctactgtatattgactattcaatatgtctagttcagcttaaccgttcaggtcacacgagcttcatc 28079983  T
Q  367 ctttagcatgtctagcccagcttgaccatttaggtcattcctaactcagcttgaccattcagtcatgtctaactcagcttcgtccttcagtatgactagc 466  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||    
T  28079984 ctttagcatgtctagctcagcttgaccatttaggtcattcctaactcagcttgaccattcagtcatgcctagctcagcttcatccttcggtatgactagc 28080083  T
Q  467 tcatcttgaccattcagatcatgcctagttcagctccacaattcaacatgtcaaactcaattccaccgtgcagcatgcctagatcggcttgattg 561  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28080084 tcatcttgaccattcaggtcatgcctagttcagctctacaattcaacatgtcaagctcaattccaccgtgcagcatgcctagatcggcttgattg 28080178  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 41092739 - 41092669
Alignment:
Q  265 ttgtgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctca 335  Q
    ||||| |||||||| ||| |||||||||| |||||| |||| || ||||||||||||| ||||||||||||    
T  41092739 ttgtggactggtatagaggaccataccacatggactttactatacattgactattcaacatgtccagctca 41092669  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 352
Target Start/End: Original strand, 42606287 - 42606366
Alignment:
Q  273 tggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctcagtttaaccgttcaggtc 352  Q
    |||||| ||| ||||||||||||||||||| || || |||||||||||||||||| || ||||  || | ||||||||||    
T  42606287 tggtatagaggaccataccacgtggactctcctatacattgactattcaatatgtacaactcaacttgatcgttcaggtc 42606366  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 271 - 352
Target Start/End: Original strand, 3400010 - 3400091
Alignment:
Q  271 actggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctcagtttaaccgttcaggtc 352  Q
    |||||||||||| |||||||||||||||||||  | || ||||||||||||| |||| || || || || | ||||||||||    
T  3400010 actggtatggaggaccataccacgtggactcttatatacattgactattcaacatgtacaacttagcttgatcgttcaggtc 3400091  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 27120882 - 27120935
Alignment:
Q  274 ggtatggagaaccataccacgtggactctactgtatattgactattcaatatgt 327  Q
    ||||||||| ||||||||||||||||||| || || ||||||||||||| ||||    
T  27120882 ggtatggaggaccataccacgtggactctcctttacattgactattcaacatgt 27120935  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 41087997 - 41087928
Alignment:
Q  266 tgtgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctca 335  Q
    |||| |||||||| ||| |||||||||| |||||| |||| || ||||||||||||| ||||||| ||||    
T  41087997 tgtggactggtatagaggaccataccacatggactttactatacattgactattcaacatgtccaactca 41087928  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 28079629 - 28079661
Alignment:
Q  9 atatctacttaattctacaaaatggttgcaatg 41  Q
    |||||||||||||||||||||||||||||||||    
T  28079629 atatctacttaattctacaaaatggttgcaatg 28079661  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 366
Target Start/End: Complemental strand, 38810197 - 38810102
Alignment:
Q  271 actggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctcagtttaaccgttcaggtcgcacgagctccatc 366  Q
    |||||||||||| |||||| |||||||||||| || || ||||||||||||| |||| |||||||  || | |||||||||| |  ||||||||||    
T  38810197 actggtatggaggaccatatcacgtggactctcctatacattgactattcaacatgtacagctcaacttgatcgttcaggtcacgtgagctccatc 38810102  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 365
Target Start/End: Complemental strand, 33933603 - 33933511
Alignment:
Q  273 tggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctcagtttaaccgttcaggtcgcacgagctccat 365  Q
    ||||||||| |||||||||||||||||||| || || ||||||||| | |||||   ||||| |||| | |||||||||| || |||||||||    
T  33933603 tggtatggaaaaccataccacgtggactctcctatacattgactataccatatgctaagctcggtttgatcgttcaggtcacatgagctccat 33933511  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 450 - 516
Target Start/End: Original strand, 10041520 - 10041586
Alignment:
Q  450 ccttcagtatgactagctcatcttgaccattcagatcatgcctagttcagctccacaattcaacatg 516  Q
    ||||||| ||| |||||| | |||||||||||||||||||||||  ||| |||||||||||||||||    
T  10041520 ccttcagcatgtctagcttaacttgaccattcagatcatgcctaactcaactccacaattcaacatg 10041586  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 47405171 - 47405107
Alignment:
Q  271 actggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctca 335  Q
    |||||||| ||| |||||||||| || ||| |||| || ||||||||||||| || |||||||||    
T  47405171 actggtatagaggaccataccacatgaactttactatacattgactattcaacatatccagctca 47405107  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 265 - 327
Target Start/End: Complemental strand, 5539161 - 5539099
Alignment:
Q  265 ttgtgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgt 327  Q
    ||||| |||||||||||| ||||||||||||||||||| || || ||||||||||||| ||||    
T  5539161 ttgtggactggtatggaggaccataccacgtggactctcctatacattgactattcaacatgt 5539099  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 271 - 352
Target Start/End: Original strand, 20634512 - 20634593
Alignment:
Q  271 actggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctcagtttaaccgttcaggtc 352  Q
    |||||||||||| |||||||||| |||||||| || || ||||| ||||||| |||| || |||||||| | ||||||||||    
T  20634512 actggtatggaggaccataccacatggactctcctatacattgaatattcaacatgtacaactcagtttgatcgttcaggtc 20634593  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 28388705 - 28388774
Alignment:
Q  266 tgtgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctca 335  Q
    ||||||||||||| ||| |||||||||| |||| | || | |||||||||||||||||||||| ||||||    
T  28388705 tgtgaactggtatagaggaccataccacatggattttattatatattgactattcaatatgtctagctca 28388774  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 13411480 - 13411407
Alignment:
Q  266 tgtgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctcagttt 339  Q
    |||| |||||||||||| | ||||||||||||||||| || ||||||||||| ||||  ||| || ||||||||    
T  13411480 tgtggactggtatggaggatcataccacgtggactctcctatatattgactaatcaacgtgtacaactcagttt 13411407  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 336
Target Start/End: Complemental strand, 7851186 - 7851118
Alignment:
Q  268 tgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctcag 336  Q
    ||||||| ||||||||| ||| ||||||||||||| || || ||||||||||||| ||||  |||||||    
T  7851186 tgaactgatatggagaatcatgccacgtggactctcctatagattgactattcaacatgtatagctcag 7851118  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 352
Target Start/End: Original strand, 20000093 - 20000174
Alignment:
Q  271 actggtatggagaaccataccacgtggactctactgtatattgactattcaatatgtccagctcagtttaaccgttcaggtc 352  Q
    |||||||||||| ||||||||||||||||||   | || ||||||||||||| |||| || ||||  || | ||||||||||    
T  20000093 actggtatggaggaccataccacgtggactcctatatacattgactattcaacatgtacaactcaacttgatcgttcaggtc 20000174  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 22749308 - 22749247
Alignment:
Q  266 tgtgaactggtatggagaaccataccacgtggactctactgtatattgactattcaatatgt 327  Q
    |||| ||| |||||||| |||||| ||||||||||||  | |||||||||||||||| ||||    
T  22749308 tgtggactagtatggaggaccatatcacgtggactctcttttatattgactattcaacatgt 22749247  T

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