View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5840-Insertion-11 (Length: 506)
Name: NF5840-Insertion-11
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840-Insertion-11 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 166 - 360
Target Start/End: Complemental strand, 21624334 - 21624142
Alignment:
| Q |
166 |
catgaaatgttaaatttccaagaagaatggagggtggacattaggatccaatgttttaaagaataacgtcaaagagtcttacgttagatgaaatacaatt |
265 |
Q |
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| T |
21624334 |
catgaaatgttaaatttccaagaagaatggagggtggacattaggatccaatgttttaaagaataacgtcaa-gagtcttac-ttagatgaaatacaatt |
21624237 |
T |
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| Q |
266 |
taaacatgcatgcgattttaattgagagacatcattatattacaaacagattttgtagggttgagttttaccccgtctaaattttaagaaagaaa |
360 |
Q |
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| T |
21624236 |
taaacatgcgtgcgattttaattgagagacatcattatattacaaacagattttgtagggttgagttttacccggtctaaattttaagaaagaaa |
21624142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 403 - 506
Target Start/End: Complemental strand, 21624113 - 21624010
Alignment:
| Q |
403 |
gcattaccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttga |
502 |
Q |
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| T |
21624113 |
gcattaccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttga |
21624014 |
T |
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| Q |
503 |
ttct |
506 |
Q |
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|||| |
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| T |
21624013 |
ttct |
21624010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 21624488 - 21624402
Alignment:
| Q |
9 |
tgtttcacaacatcgttgatgagattaaaatagttcaattgtgaatgaaggaattgatggggtatcaagaagctcatcaaggaacacc |
96 |
Q |
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| T |
21624488 |
tgtttcacaacatcgttgatgagattaat-tagttcaattgtgaatgaaggaattgatgggctatcaagaagctcatcaaggaacacc |
21624402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 405 - 503
Target Start/End: Original strand, 40466130 - 40466228
Alignment:
| Q |
405 |
attaccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttgat |
503 |
Q |
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|||||||| || |||||||| |||||||||||||| ||||||||| | ||||||||||| |||||||||||||| |||||||| ||||||||||||||| |
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| T |
40466130 |
attaccaattcttttccaagttcaatagcagcatccttatagctagttttgttaccagggctactaccacaaaacacacaaattctcttaaactttgat |
40466228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 407 - 502
Target Start/End: Original strand, 28271927 - 28272022
Alignment:
| Q |
407 |
taccaactcatttccaagctcaatagcagcatctttatagctactcttgttaccaggactactaccacaaaaaacacaaatcctcttaaactttga |
502 |
Q |
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|||||| ||||||||||| ||||| |||||||||| ||| ||||| || || ||||||||||| |||||||| ||||||| |||||| |||||||| |
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| T |
28271927 |
taccaattcatttccaagttcaatggcagcatcttgataactacttttcttgccaggactacttccacaaaagacacaaaccctcttgaactttga |
28272022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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