View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5840-Insertion-12 (Length: 318)

Name: NF5840-Insertion-12
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5840-Insertion-12
NF5840-Insertion-12
[»] chr8 (2 HSPs)
chr8 (9-318)||(37468991-37469300)
chr8 (12-170)||(37464206-37464358)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 318
Target Start/End: Complemental strand, 37469300 - 37468991
Alignment:
Q  9 atttagaggttcgtcgtgagactgagattgagaccgatcgacgaggcttaaggtatggagatcaaaatgttagtactacttatgaaagtgttgatgaaga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37469300 atttagaggttcgtcgtgagactgagattgagaccgatcgacgaggcttaaggtatggagatcaaaatgttagtactacttatgaaagtgttgatgaaga 37469201  T
Q  109 agcggatgcttttattcaacatgagcatagaaggacggcgttagctaaactcatgtcatcaatgaggggtacttaattgagccttttcaatcttattatc 208  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37469200 agctgatgcttttattcaacatgagcataggaggacggcgttagctaaactcatgtcatcaatgaggggtacttaattgagccttttcaaacttattatc 37469101  T
Q  209 tatgtagggccttcttgtgttgcacatataacatttgtagaagatctgtatccatttgatgtagatttagatcctctaaaatcgttgtatggtacgacac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||    
T  37469100 tatgtagggccttcttgtgttgcacatataacatttgtagaagatctgtatccattttatgtggatttagatcctctaaaatcgttgtatggtacaacac 37469001  T
Q  309 ttataattta 318  Q
    || |||||||    
T  37469000 ttgtaattta 37468991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 37464358 - 37464206
Alignment:
Q  12 tagaggttcgtcgtgagactgagattgagaccgatcgacgaggcttaaggtatggagatcaaaatgttagtactacttatgaaagtgttgatgaagaagc 111  Q
    ||||||||||||||||||||||||   |||| ||||||| |||    |||| ||| ||||||||||   |||| |||||||||| ||||||  |||| ||    
T  37464358 tagaggttcgtcgtgagactgaga---agactgatcgacaaggtacgaggtttggtgatcaaaatg---gtacaacttatgaaaatgttgaccaagaggc 37464265  T
Q  112 ggatgcttttattcaacatgagcatagaaggacggcgttagctaaactcatgtcatcaa 170  Q
     || ||||||||||||||||||||||  |||| ||| ||||| ||||||||||||||||    
T  37464264 tgaggcttttattcaacatgagcataagaggatggcattagcaaaactcatgtcatcaa 37464206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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