View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5840-Insertion-13 (Length: 288)
Name: NF5840-Insertion-13
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840-Insertion-13 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 32267105 - 32266852
Alignment:
| Q |
9 |
ggtggaaacctcatttatggtctaagagaaaatcccaagaaaacaatgaggtttgtgcattctcatcatcatcattataatcatcannnnnnnnnnnnnn |
108 |
Q |
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| T |
32267105 |
ggtggaaacctcatttatggtctaagagaaaatcccaagaaaacaatgaggtttgtgcattctcatcatcatcattataatcatcatgctgctactgctg |
32267006 |
T |
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| Q |
109 |
nnnnaaccacattggaacaaaatgaaatgatcaaattctgcaaagaatgtgggaaaggttttccttcattgaaagcactttgtggacacatggcttctca |
208 |
Q |
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| T |
32267005 |
ctgcaaccacattggaacaaaatgaaatgatcaaattctgcaaagaatgtgggaaaggttttccttcattgaaagcactttgtggacacatggcttctca |
32266906 |
T |
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| Q |
209 |
ttctgagaaagagaaaaagatcaacaaggctatgatggaggaggatactcaatc |
262 |
Q |
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| T |
32266905 |
ttctgagaaagagaaaaagatcaacaaggctatgatggaggaggatactcaatc |
32266852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 19301476 - 19301397
Alignment:
| Q |
141 |
aaattctgcaaagaatgtgggaaaggttttccttcattgaaagcactttgtggacacatggcttctcattctgagaaaga |
220 |
Q |
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| T |
19301476 |
aaattctgcaaagaatgtggaaaaggttttccatcattgaaagcactgtgtggtcacatggcttgtcactctgagaaaga |
19301397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 19301560 - 19301508
Alignment:
| Q |
15 |
aacctcatttatggtctaagagaaaatcccaagaaaacaatgaggtttgtgca |
67 |
Q |
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| T |
19301560 |
aaccttatttatggtcttagagagaatcccaagaaaacaactaggtttgtgca |
19301508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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