View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5840-Insertion-14 (Length: 280)

Name: NF5840-Insertion-14
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5840-Insertion-14
NF5840-Insertion-14
[»] chr5 (5 HSPs)
chr5 (9-280)||(37386525-37386796)
chr5 (113-241)||(37440785-37440913)
chr5 (9-71)||(37440930-37440991)
chr5 (49-97)||(35135734-35135782)
chr5 (50-98)||(37063145-37063193)
[»] chr1 (1 HSPs)
chr1 (50-97)||(29007788-29007835)
[»] chr4 (3 HSPs)
chr4 (51-103)||(22471283-22471335)
chr4 (50-98)||(27406002-27406050)
chr4 (50-98)||(32764892-32764940)
[»] chr2 (1 HSPs)
chr2 (50-97)||(17952773-17952820)
[»] scaffold0590 (1 HSPs)
scaffold0590 (50-104)||(1139-1193)
[»] scaffold0275 (1 HSPs)
scaffold0275 (50-104)||(2782-2836)
[»] chr8 (1 HSPs)
chr8 (50-96)||(27728094-27728140)
[»] chr7 (2 HSPs)
chr7 (52-93)||(503402-503443)
chr7 (50-94)||(2727435-2727479)
[»] chr6 (1 HSPs)
chr6 (52-97)||(27595639-27595684)
[»] chr3 (1 HSPs)
chr3 (50-98)||(53736184-53736232)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 37386525 - 37386796
Alignment:
Q  9 gtttggataaacaactcaatgaaacgcttaccacattagtatatttctataataaaagaaaaattaaaggcaaactattttcatataagtcataaacaac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37386525 gtttggataaacaactcaatgaaacgcttaccacattagtatatttctataataaaagaaaaattaaaggcaaactattttcatataagtcataaacaac 37386624  T
Q  109 ttgttaacttattgtaagttcatttcataagctctctacagtctcacaagtaggtaaactcagataagtcaattcaaagaggtctgaaatacttttttga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  37386625 ttgttaacttattgtaagttcatttcataagctctctacagtctcacaagtagataaactcagataagtcaattcaaacaggtctgaaatacttttttga 37386724  T
Q  209 caaactttgaaattcaaaatgtcgaaactcaaaaaatctgacctttccctggaataaaaactagcccacttc 280  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37386725 caaattttgaaattcaaaatatcgaaactcaaaaaatctgacctttccctggaataaaaaccagcccacttc 37386796  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 113 - 241
Target Start/End: Complemental strand, 37440913 - 37440785
Alignment:
Q  113 taacttattgtaagttcatttcataagctctctacagtctcacaagtaggtaaactcagataagtcaattcaaagaggtctgaaatacttttttgacaaa 212  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||||  |||||||||||||||||||||||||    
T  37440913 taacttattgtaagttcttttcataagctctctacagtctcacaagcagataaacgcagataagtcaattcaagcaggtctgaaatacttttttgacaaa 37440814  T
Q  213 ctttgaaattcaaaatgtcgaaactcaaa 241  Q
     |||||||||||||||  |||||||||||    
T  37440813 ttttgaaattcaaaataccgaaactcaaa 37440785  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 37440991 - 37440930
Alignment:
Q  9 gtttggataaacaactcaatgaaacgcttaccacattagtatatttctataataaaagaaaaa 71  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||    
T  37440991 gtttggataaacaactcaatgaagcgcttaccacataagta-atttctatagtaaaagaaaaa 37440930  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 35135782 - 35135734
Alignment:
Q  49 atatttctataataaaagaaaaattaaaggcaaactattttcatataag 97  Q
    |||||||||||| |||||| ||| ||||| |||||||||||||||||||    
T  35135782 atatttctataacaaaagataaaataaagtcaaactattttcatataag 35135734  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 37063193 - 37063145
Alignment:
Q  50 tatttctataataaaagaaaaattaaaggcaaactattttcatataagt 98  Q
    ||||||||||| |||||| ||| ||||| ||||||||||||||||||||    
T  37063193 tatttctataacaaaagataaaataaagtcaaactattttcatataagt 37063145  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 29007835 - 29007788
Alignment:
Q  50 tatttctataataaaagaaaaattaaaggcaaactattttcatataag 97  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||    
T  29007835 tatttctataacaaaagaaaaattaaagtcaaactattttcatataag 29007788  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 22471283 - 22471335
Alignment:
Q  51 atttctataataaaagaaaaattaaaggcaaactattttcatataagtcataa 103  Q
    |||||| |||| ||||| |||||||||||||||| ||||||||||||| ||||    
T  22471283 atttctttaattaaagataaattaaaggcaaactgttttcatataagttataa 22471335  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 27406002 - 27406050
Alignment:
Q  50 tatttctataataaaagaaaaattaaaggcaaactattttcatataagt 98  Q
    |||||||||| ||||||| ||| |||||||||||||||| |||||||||    
T  27406002 tatttctatagtaaaagataaaataaaggcaaactatttgcatataagt 27406050  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 32764892 - 32764940
Alignment:
Q  50 tatttctataataaaagaaaaattaaaggcaaactattttcatataagt 98  Q
    ||||||||||| |||||||||| |||||||| ||| |||| ||||||||    
T  32764892 tatttctataacaaaagaaaaaataaaggcagactgtttttatataagt 32764940  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 17952820 - 17952773
Alignment:
Q  50 tatttctataataaaagaaaaattaaaggcaaactattttcatataag 97  Q
    ||||||||||| |||||| ||| ||||| |||||||||||||||||||    
T  17952820 tatttctataacaaaagataaaataaagtcaaactattttcatataag 17952773  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 1193 - 1139
Alignment:
Q  50 tatttctataataaaagaaaaattaaaggcaaactattttcatataagtcataaa 104  Q
    ||||||||||| |||||| ||| ||||| ||||||||| ||||||||| ||||||    
T  1193 tatttctataacaaaagataaaataaagtcaaactattctcatataagccataaa 1139  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 2782 - 2836
Alignment:
Q  50 tatttctataataaaagaaaaattaaaggcaaactattttcatataagtcataaa 104  Q
    ||||||||||| |||||| ||| ||||| ||||||||| ||||||||| ||||||    
T  2782 tatttctataacaaaagataaaataaagtcaaactattctcatataagccataaa 2836  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 27728140 - 27728094
Alignment:
Q  50 tatttctataataaaagaaaaattaaaggcaaactattttcatataa 96  Q
    ||||||||||| |||||| ||| ||||| ||||||||||||||||||    
T  27728140 tatttctataaaaaaagataaaataaagtcaaactattttcatataa 27728094  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 503443 - 503402
Alignment:
Q  52 tttctataataaaagaaaaattaaaggcaaactattttcata 93  Q
    |||||||||||||||||||||||||| ||| | |||||||||    
T  503443 tttctataataaaagaaaaattaaagtcaatccattttcata 503402  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 2727479 - 2727435
Alignment:
Q  50 tatttctataataaaagaaaaattaaaggcaaactattttcatat 94  Q
    ||||||||||| |||||| ||| |||||||||||| |||||||||    
T  2727479 tatttctataacaaaagataaaataaaggcaaactcttttcatat 2727435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 27595684 - 27595639
Alignment:
Q  52 tttctataataaaagaaaaattaaaggcaaactattttcatataag 97  Q
    |||||||||||||||| ||| ||||| |||| ||||||||||||||    
T  27595684 tttctataataaaagataaaataaagtcaaattattttcatataag 27595639  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 53736232 - 53736184
Alignment:
Q  50 tatttctataataaaagaaaaattaaaggcaaactattttcatataagt 98  Q
    ||||||||||| |||||| ||| ||| | ||||||||||||||||||||    
T  53736232 tatttctataacaaaagataaaataatgtcaaactattttcatataagt 53736184  T

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