View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5840-Insertion-2 (Length: 1015)

Name: NF5840-Insertion-2
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5840-Insertion-2
NF5840-Insertion-2
[»] chr1 (3 HSPs)
chr1 (9-332)||(2625603-2625910)
chr1 (455-731)||(2626221-2626496)
chr1 (451-597)||(2626002-2626148)
[»] chr6 (2 HSPs)
chr6 (9-192)||(28840933-28841117)
chr6 (10-72)||(28537385-28537447)
[»] chr3 (3 HSPs)
chr3 (588-709)||(51242102-51242223)
chr3 (732-866)||(17502453-17502589)
chr3 (594-682)||(51242201-51242289)
[»] chr7 (5 HSPs)
chr7 (596-705)||(17352490-17352599)
chr7 (10-72)||(17352332-17352394)
chr7 (535-597)||(22367106-22367168)
chr7 (661-705)||(22367247-22367291)
chr7 (469-507)||(22367088-22367126)
[»] chr4 (4 HSPs)
chr4 (596-700)||(33033636-33033740)
chr4 (464-585)||(33661127-33661257)
chr4 (10-72)||(13249647-13249709)
chr4 (10-72)||(33685959-33686021)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 9 - 332
Target Start/End: Original strand, 2625603 - 2625910
Alignment:
Q  9 aatattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaacactactaattgttgttttcttattcttctggtattgtttttttc 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  2625603 aatattggtattgtagttgttcatttatgtgcagttagctttgtcacctttgtaacactactaattgttgttttcttattcttctagtattgttttttt- 2625701  T
Q  109 atattgnnnnnnnnnnccaacaattaaattgtggctgaagagttccaccacgtgctttgtcttgtactccaacacatgagctaaatgtcttccactattt 208  Q
                    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2625702 ---------------tccaacaattaaattgtggctgaagagttccaccatgtgctttgtcttgtactccatcacatgagctaaatgtcttccactattt 2625786  T
Q  209 attctccatacatatgtcattacgtgaaacaattgcatatgaatgaggatatgccttcatctaacaatcaccaacacatgcgctttaatatagatttttg 308  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2625787 attctccatacatatgtcattacgtgaaacaattgcgtatgaatgaggatatgccttcatctaacaatcaccaacacatgcgctttaatatagatttttg 2625886  T
Q  309 aaacgatttattttatgtgtacag 332  Q
    ||||||||||||||||||||||||    
T  2625887 aaacgatttattttatgtgtacag 2625910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 455 - 731
Target Start/End: Original strand, 2626221 - 2626496
Alignment:
Q  455 caaggagcaattcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgagagacaacatagaccatgagttggacaatg 554  Q
    |||||| |||||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2626221 caaggatcaattcaagaaaatattgaagtcacggaccatgatttgaacaatagcatagatatgaatttgggagacaacatagaccatgagttggacaatg 2626320  T
Q  555 gtaagttatttttctttaactcattcattaataattttttcttcattgttgttcaaagagtctttcactatttcttcttctatgttgcccaatgaatttt 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2626321 gtaagttatttttctttaactcattcattaataattttttcttcattgttgttcaaagagtctttcattatttcttcttctatgttgcccaatgaatttt 2626420  T
Q  655 ccactcttttttctccattgttgttcaatgatccttccactgttttctcttgtttcatgggattctttgggttgttc 731  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  2626421 ccactcttttttctccattgttgttcaatgatccttccactgttttctcttgtttcat-ggattctttggtttgttc 2626496  T

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Target: chr1; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 451 - 597
Target Start/End: Original strand, 2626002 - 2626148
Alignment:
Q  451 catgcaaggagcaattcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgagagacaacatagaccatgagttggac 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2626002 catgcaaggagcaattcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgggagacaacatagaccatgagttggac 2626101  T
Q  551 aatggtaagttatttttctttaactcattcattaataattttttctt 597  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2626102 aatggtaagttatttttctttaactcattcattaataattttttctt 2626148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 8e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 28840933 - 28841117
Alignment:
Q  9 aatattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaacactactaattgttgttttcttattcttctggtattgtttttttc 108  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28840933 aatattggtattgtagttgttcatttatgtgtatttagttttgtcacctttgtaacactactaattgttgttttcttattcttctggtattgtttttttc 28841032  T
Q  109 atattg-nnnnnnnnnnccaacaattaaattgtggctgaagagttccaccacgtgctttgtcttgtactccaacacatgagctaa 192  Q
    ||||||           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28841033 atattgttttttttcttccaacaattaaattgtggctgaggagttccaccacgtgctttgtcttgtactccaacacatgagctaa 28841117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 28537385 - 28537447
Alignment:
Q  10 atattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaacactactaa 72  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28537385 atattggtattgtatttgttcatttatgtgcatttagctttgtcacctttgttacactactaa 28537447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 3e-57; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 588 - 709
Target Start/End: Complemental strand, 51242223 - 51242102
Alignment:
Q  588 attttttcttcattgttgttcaaagagtctttcactatttcttcttctatgttgcccaatgaattttccactcttttttctccattgttgttcaatgatc 687  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51242223 atttcttcttcattgttgttcaaagagtctttcactatttcttcttctatgttgcccaatgaattttccgctcttttttctccattgttgttcaatgatc 51242124  T
Q  688 cttccactgttttctcttgttt 709  Q
    ||||||||||||||||||||||    
T  51242123 cttccactgttttctcttgttt 51242102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 732 - 866
Target Start/End: Original strand, 17502453 - 17502589
Alignment:
Q  732 aattgaagttaaattcattagttttgtt-gcattcaacaaggttgggcataataagaactttcttttgc-tatgtagaaatgaatgggttccagttccag 829  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| |||||| ||||||||||  | ||||||||     
T  17502453 aattgaagttaaattcattagttttgtttgcattcaacaaggtttggcataataagaac-ttcttttgcttatgtaaaaatgaatgg--ttcagttccat 17502549  T
Q  830 gatt-attaatgctttag-atttc-attcatttaaggaaa 866  Q
     ||| ||||||| ||||| ||||| |||||||||||||||    
T  17502550 tattaattaatggtttagaatttcaattcatttaaggaaa 17502589  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 594 - 682
Target Start/End: Complemental strand, 51242289 - 51242201
Alignment:
Q  594 tcttcattgttgttcaaagagtctttcactatttcttcttctatgttgcccaatgaattttccactcttttttctccattgttgttcaa 682  Q
    |||||| |||||||||| ||||||| |||||||||||||||  ||||| ||||||||| ||| ||| ||| |||| |||||||||||||    
T  51242289 tcttcaatgttgttcaaggagtcttccactatttcttcttcattgttgtccaatgaatcttctactatttcttcttcattgttgttcaa 51242201  T

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Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 596 - 705
Target Start/End: Original strand, 17352490 - 17352599
Alignment:
Q  596 ttcattgttgttcaaagagtctttcactatttcttcttctatgttgcccaatgaattttccactcttttttctccattgttgttcaatgatccttccact 695  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  17352490 ttcattgttgtccaaagagtcttccactatttcttcttctatgctacccaatgaattttccactgttttttctccattgtagttcaatgatccttccact 17352589  T
Q  696 gttttctctt 705  Q
    ||||| ||||    
T  17352590 gttttttctt 17352599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 17352332 - 17352394
Alignment:
Q  10 atattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaacactactaa 72  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17352332 atattggtattgtatttgttcatttatgtgcatttagctttgtcacctttgttacactactaa 17352394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 535 - 597
Target Start/End: Original strand, 22367106 - 22367168
Alignment:
Q  535 agaccatgagttggacaatggtaagttatttttctttaactcattcattaataattttttctt 597  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||    
T  22367106 agaccatgatttggacaatggtaagttgtttttatttaactcattcattaagaattttttctt 22367168  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 661 - 705
Target Start/End: Original strand, 22367247 - 22367291
Alignment:
Q  661 ttttttctccattgttgttcaatgatccttccactgttttctctt 705  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  22367247 ttttttctccattgttgttcaatgatccttccactgttttttctt 22367291  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 469 - 507
Target Start/End: Original strand, 22367088 - 22367126
Alignment:
Q  469 agaaaatattgaagtcacataccatgatttggacaatgg 507  Q
    |||||||||||||||| || |||||||||||||||||||    
T  22367088 agaaaatattgaagtcccagaccatgatttggacaatgg 22367126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 5e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 596 - 700
Target Start/End: Original strand, 33033636 - 33033740
Alignment:
Q  596 ttcattgttgttcaaagagtctttcactatttcttcttctatgttgcccaatgaattttccactcttttttctccattgttgttcaatgatccttccact 695  Q
    ||||||||||| |||||||| || |||||||| |||||||||| |  ||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  33033636 ttcattgttgtccaaagagtattccactatttattcttctatgctatccaatgaattttccactgttttttctccattgtagttcaatgatccttccact 33033735  T
Q  696 gtttt 700  Q
     ||||    
T  33033736 atttt 33033740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 464 - 585
Target Start/End: Complemental strand, 33661257 - 33661127
Alignment:
Q  464 attcaagaaaatattgaagtcacataccatgatttggacaatggcatagatatgaatttgagagacaa---------catagaccatgagttggacaatg 554  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||  ||||||         || | || |||| ||||||||||    
T  33661257 attcaagaaaatactgaagtcacataccatgatttggacaatggtatagatatgaatttggaagacaatttagaagtcacaaacaatgatttggacaatg 33661158  T
Q  555 gtaagttatttttctttaactcattcattaa 585  Q
    |||||||||||||||||| ||||||||||||    
T  33661157 gtaagttatttttctttagctcattcattaa 33661127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 13249647 - 13249709
Alignment:
Q  10 atattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaacactactaa 72  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13249647 atattagtattgtatttgttcatttatgtgcatttagctttgtcacctttgttacactactaa 13249709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 33686021 - 33685959
Alignment:
Q  10 atattggtattgtagttgttcatttatgtgcatttagctttgtcacctttgtaacactactaa 72  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  33686021 atattggtattgtatttgttcatttatgtgcatttagctttgtcccctttcttacactactaa 33685959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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