View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5840-Insertion-4 (Length: 923)
Name: NF5840-Insertion-4
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840-Insertion-4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 763; Significance: 0; HSPs: 26)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 763; E-Value: 0
Query Start/End: Original strand, 8 - 913
Target Start/End: Complemental strand, 38987879 - 38986974
Alignment:
| Q |
8 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38987879 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcct------ccagac |
38987786 |
T |
|
| Q |
108 |
aggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38987785 |
aggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag |
38987686 |
T |
|
| Q |
208 |
caaccacagcatcagctaaacgatattttttggcgnnnnnnnnnnnnnnnnnntacttcttctccttgttctcctccaccacctcttcttcttcatcttg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38987685 |
caaccacagcatcagctaaacgatattttttggcggcagcagcagcagcagcatacttcttctccctgttctcctccaccacctcttcttcttcatcttg |
38987586 |
T |
|
| Q |
308 |
gttgtcctgttggttgtcctggaggaggacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38987585 |
gttgtcctgttggttgtcctggaggaggacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtac |
38987486 |
T |
|
| Q |
408 |
tgatcagcatctaagaaacagtgggtcaacgtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggac |
507 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38987485 |
tgatgagcatctaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggac |
38987386 |
T |
|
| Q |
508 |
ccaaagaagcaacaacgttaggaggcagaaagatcaaatccccgcagcaaatagggacgatttcaacagaaaaaaggtatctttcagttctaggaataat |
607 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38987385 |
ccaaagaagcaacaacattaggaggcagaaagatcaaatccccgcagcaaatggggacgatttcaacagaaaaaaggtatctttcagttctaggaataat |
38987286 |
T |
|
| Q |
608 |
catagcccaattagacttgacaggaactatgtcccctataagtgtcgcaaaataccaagcacaagatgttatattgaaacagaaagaaaaaccttgatca |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38987285 |
catagcccaattagacttgacaggaactatgtcccctataagtgtcgcaaaataccaagcacaagatattatattgaaacagaaagaaaaaccttgatca |
38987186 |
T |
|
| Q |
708 |
acgtcgtatatgattttctcaacatcatcaaggataccaagattggtcataacgctgatctgctcc-aatgaaagacagtacgaagttgagaaacatgtt |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38987185 |
acgtcgtatatgattttctcaacatcatcaaggataccaagattggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgtt |
38987086 |
T |
|
| Q |
807 |
gttgacgaactttcacaacagaacgccacccttgctccatcttctccac-ttttgacctaatttctttgcaa-tgcagcaa-tgccg-aactcacttttt |
902 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
38987085 |
gttgacgaactttcacaacagaacgccacccttgctccatcttctccactttttgacctaatttctttgcaattgcagcaattgccgaaactcacttttt |
38986986 |
T |
|
| Q |
903 |
a-tctatctatt |
913 |
Q |
| |
|
| |||||||||| |
|
|
| T |
38986985 |
attctatctatt |
38986974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 8 - 868
Target Start/End: Complemental strand, 39726598 - 39725745
Alignment:
| Q |
8 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39726598 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagac |
39726499 |
T |
|
| Q |
108 |
aggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39726498 |
aggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag |
39726399 |
T |
|
| Q |
208 |
caaccacagcatcagctaaacgatattttttggcgnnnnnnnnnnnnnnnnnntacttcttctccttgttctcctccaccacctcttcttcttcatcttg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39726398 |
caaccacagcatcagctaaacgatattttttggcggcagcagcagcagcagcatccttcttctccttgttctcctccaccacctcttcttcttcatcttg |
39726299 |
T |
|
| Q |
308 |
gttgtcctgttggttgtcctggaggaggacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39726298 |
gttgtcctgttggttgtcctggaggaggacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtac |
39726199 |
T |
|
| Q |
408 |
tgatcagcatctaagaaacagtgggtcaacgtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggac |
507 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39726198 |
tgatgagcatctaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata---------tttggac |
39726108 |
T |
|
| Q |
508 |
ccaaagaagcaacaacgttaggaggcagaaagatcaaatccccgcagcaaatagggacgatttcaacagaaaaaaggtatctttcagttctaggaataat |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39726107 |
ccaaagaagcaacaacgttaggaggcagaaagatcaaatccccgcagcaaatggggacgatttcaacagaaaaaaggtatctttcagttctaggaataat |
39726008 |
T |
|
| Q |
608 |
catagcccaattagacttgacaggaactatgtcccctataagtgtcgcaaaataccaagcacaagatgttatattgaaacagaaagaaaaaccttgatca |
707 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39726007 |
catagcccaagcagacttgacaggaactatttcccctataagtctcgcaaaatgccaagcacaagatgttatattgaaacagaaagaaaaaccttgatca |
39725908 |
T |
|
| Q |
708 |
acgtcgtatatgattttctcaacatcatcaaggataccaagattggtcataacgctgatctgctcc-aatgaaagacagtacgaagttgagaaacatgtt |
806 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39725907 |
acgtcgtatatgattctctcaacacgatcaacgatagcaagattggtcataacgctgatctgctccaaatgaaagacagtacgaagttgagaaacatgtt |
39725808 |
T |
|
| Q |
807 |
gttgacgaactttcacaacagaacgccacccttgctccatcttctccac-ttttgacctaatt |
868 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39725807 |
gttgacgaactttcacaacagaacgccacccttgctccatcttctccactttttgacctaatt |
39725745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 8 - 878
Target Start/End: Complemental strand, 39879994 - 39879129
Alignment:
| Q |
8 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39879994 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagac |
39879895 |
T |
|
| Q |
108 |
aggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39879894 |
aggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag |
39879795 |
T |
|
| Q |
208 |
caaccacagcatcagctaaacgatattttttggcgnnnnnnnnnnnnnnnnnntacttcttctccttgttctcctccaccacctcttcttcttcatcttg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||| || |||||||||||||||||||||||||||||| ||| |
|
|
| T |
39879794 |
caaccacagcatcagctaaacgatattttttggcggcagcagcagcagcagcatccttctccttcttgttctcctccaccacctcttcttcttcttct-- |
39879697 |
T |
|
| Q |
308 |
gttgtcctgttggttgtcctggaggaggacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtac |
407 |
Q |
| |
|
|| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39879696 |
----tcatcttgattgtcctggaggaggacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtac |
39879601 |
T |
|
| Q |
408 |
tgatcagcatctaagaaacagtgggtcaacgtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggac |
507 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39879600 |
tgatgagcatctaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatga---------caatatttggac |
39879510 |
T |
|
| Q |
508 |
ccaaagaagcaacaacgttaggaggcagaaagatcaaatccccgcagcaaatagggacgatttcaacagaaaaaaggtatctttcagttctaggaataat |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||| ||||| || ||||| ||| |
|
|
| T |
39879509 |
ccaaagaagcaacaacgttaggaggcagaaagatcaaatccccgcagcaaatggggacgattttaacacgaaaaaggtatatttcactttcaggaagaat |
39879410 |
T |
|
| Q |
608 |
catagcccaattagacttg--acaggaactatgtcccctataagtgtcgcaaaataccaagcacaagatgttatattgaaacagaaagaaaaaccttgat |
705 |
Q |
| |
|
|||| |||||| | ||||| ||||||| ||| | | | |||||| | |||||| ||||||| ||||||||| | |||||||||||||||||||| || |
|
|
| T |
39879409 |
catatcccaatcaaacttgacacaggaagtattttctcaataagttccacaaaatcccaagcataagatgttaaacggaaacagaaagaaaaaccttcat |
39879310 |
T |
|
| Q |
706 |
caacgtcgtatatgattttctcaacatcatcaaggataccaagattggtcataacgctgatctgctcc-aatgaaagacagtacgaagttgagaaacatg |
804 |
Q |
| |
|
||| ||||||| ||||| ||| | | | | || | |||||| |||| ||| |||||||||||||||| ||||||||| |||||| || ||| ||||||| |
|
|
| T |
39879309 |
caatgtcgtatttgattctcttagctttacgaacggtaccaaaattgttcaaaacgctgatctgctccaaatgaaagaaagtacgcagctgacaaacatg |
39879210 |
T |
|
| Q |
805 |
ttgttgacgaactttc---acaacagaacg---ccacccttgctccatcttctccact-tttgacctaatttctttgcaat |
878 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39879209 |
ttgttgacgaacattcacaacaacagaacgccaccacccttcctccatcttctccactctttgacctaatttctttgcaat |
39879129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 317 - 678
Target Start/End: Complemental strand, 40418166 - 40417805
Alignment:
| Q |
317 |
ttggttgtcctggaggaggacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatcagca |
416 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40418166 |
ttggttatcctggaggaggacagtatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagca |
40418067 |
T |
|
| Q |
417 |
tctaagaaacagtgggtcaacgtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaag |
516 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |
|
|
| T |
40418066 |
tctaagaaacagtgggtcaaggtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatattttcaccgaaagaag |
40417967 |
T |
|
| Q |
517 |
caacaacgttaggaggcagaaagatcaaatccccgcagcaaatagggacgatttcaacagaaaaaaggtatctttcagttctaggaataatcatagccca |
616 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| || |||| ||||||| |||| |
|
|
| T |
40417966 |
caacaacattaggaggcagaaagatcaaatccccgcagcaaatggggacgatttcaacacgaaaaaggtatctttcactttcaggaggaatcatatccca |
40417867 |
T |
|
| Q |
617 |
attagacttgacaggaactatgtcccctataagtgtcgcaaaataccaagcacaagatgtta |
678 |
Q |
| |
|
|| | || ||||||||| ||| |||||||||||| || |||||| ||||||| ||||||||| |
|
|
| T |
40417866 |
atcaaacctgacaggaagtatttcccctataagtttcacaaaatgccaagcaaaagatgtta |
40417805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 40418457 - 40418230
Alignment:
| Q |
8 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagac |
107 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
40418457 |
accattctcttcggcataactaatcttggtgatcaaaatggcagcaggaaggttgatattgatgttggtgtcagctcctccttctcct------ccagac |
40418364 |
T |
|
| Q |
108 |
aggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40418363 |
aggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgag |
40418264 |
T |
|
| Q |
208 |
caaccacagcatcagctaaacgatattttttggc |
241 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
40418263 |
caaccacagcatcagctaaacaatattttttggc |
40418230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 337 - 587
Target Start/End: Original strand, 1163941 - 1164191
Alignment:
| Q |
337 |
caatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatcagcatctaagaaacagtgggtcaa |
436 |
Q |
| |
|
||||| |||||||| ||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| |||| | |||||||||||||||||| |
|
|
| T |
1163941 |
caataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaa |
1164040 |
T |
|
| Q |
437 |
cgtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacgttaggaggcaga |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||| ||| ||| ||||||| |
|
|
| T |
1164041 |
ggtaaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcaga |
1164140 |
T |
|
| Q |
537 |
aagatcaaatccccgcagcaaatagggacgatttcaacagaaaaaaggtat |
587 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1164141 |
ataatcaaatccccgcagcaaattgggacgatttcaacagaaaaaaggtat |
1164191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 338 - 592
Target Start/End: Complemental strand, 3299353 - 3299099
Alignment:
| Q |
338 |
aatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatcagcatctaagaaacagtgggtcaac |
437 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| |||| | |||||||||||||||||| |
|
|
| T |
3299353 |
aataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag |
3299254 |
T |
|
| Q |
438 |
gtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacgttaggaggcagaa |
537 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||| | | |||||||| |
|
|
| T |
3299253 |
gtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa |
3299154 |
T |
|
| Q |
538 |
agatcaaatccccgcagcaaatagggacgatttcaacagaaaaaaggtatctttc |
592 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||| | ||||||| |
|
|
| T |
3299153 |
taatcaaatccccgcaacaaattgggacgatttcaacagaaaaaatgcatctttc |
3299099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 338 - 592
Target Start/End: Complemental strand, 3392246 - 3391992
Alignment:
| Q |
338 |
aatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatcagcatctaagaaacagtgggtcaac |
437 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| |||| ||||||| | ||||| ||||| | |||||| ||| |||| | |||||||||||||||||| |
|
|
| T |
3392246 |
aataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaag |
3392147 |
T |
|
| Q |
438 |
gtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacgttaggaggcagaa |
537 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||| | | |||||||| |
|
|
| T |
3392146 |
gtaaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaa |
3392047 |
T |
|
| Q |
538 |
agatcaaatccccgcagcaaatagggacgatttcaacagaaaaaaggtatctttc |
592 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||| | ||||||| |
|
|
| T |
3392046 |
taatcaaatccccgcaacaaattgggacgatttcaacagaaaaaatgcatctttc |
3391992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 343 - 587
Target Start/End: Complemental strand, 1849819 - 1849575
Alignment:
| Q |
343 |
cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatcagcatctaagaaacagtgggtcaacgtaaa |
442 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| ||||||| | ||||| ||||| | |||||| ||||||| | |||||||||| ||||||| ||||| |
|
|
| T |
1849819 |
cgagaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaacagcgggtcaaggtaaa |
1849720 |
T |
|
| Q |
443 |
tggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacgttaggaggcagaaagatc |
542 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||||||| ||||||||| ||| ||| |||||||| ||| |
|
|
| T |
1849719 |
tggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc |
1849620 |
T |
|
| Q |
543 |
aaatccccgcagcaaatagggacgatttcaacagaaaaaaggtat |
587 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1849619 |
aaatccccgcagcaaattgggacgatttcaacagaaaaaaggtat |
1849575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 39169012 - 39168793
Alignment:
| Q |
22 |
cataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaag |
121 |
Q |
| |
|
|||||||| ||||| | |||||||| ||||||||||||| | |||| | ||||||| |||||||||| || || | |||||||| |||||||||||| |
|
|
| T |
39169012 |
cataactactcttggtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttctttacgtccagacaagtcataaccaag |
39168913 |
T |
|
| Q |
122 |
agcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatca |
221 |
Q |
| |
|
||||| |||||||| |||||| ||| |||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
39168912 |
agcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatca |
39168813 |
T |
|
| Q |
222 |
gctaaacgatattttttggc |
241 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
39168812 |
gctaaccgatattttttggc |
39168793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 331 - 581
Target Start/End: Complemental strand, 39399764 - 39399520
Alignment:
| Q |
331 |
ggaggacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatcagcatctaagaaacagtg |
430 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| | |||| || | |
|
|
| T |
39399764 |
ggaggacaatattgagaacaaaatatttgactaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagc |
39399665 |
T |
|
| Q |
431 |
ggtcaacgtaaatggatcaagcaa---agtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacgtta |
527 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||| ||| || |||||| |||| | | |
|
|
| T |
39399664 |
ggtcaaggtaaatggatcaagcaaagtagtaatttttttggcaaccctagtgcatatga---------caatatttgcaccgaacgaagcagcaacatca |
39399574 |
T |
|
| Q |
528 |
ggaggcagaaagatcaaatccccgcagcaaatagggacgatttcaacagaaaaa |
581 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
39399573 |
ggaggcagaaaaatcaaatccccgcagcaaatggggacgatttcaacaaaaaaa |
39399520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 3299620 - 3299480
Alignment:
| Q |
104 |
agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
3299620 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
3299521 |
T |
|
| Q |
201 |
acacgagcaaccacagcatcagctaaacgatattttttggc |
241 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3299520 |
acacgagcaaccatggcatcagctaaacgatattttttggc |
3299480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 104 - 241
Target Start/End: Complemental strand, 3392513 - 3392373
Alignment:
| Q |
104 |
agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | |||||||||| |||||||| |
|
|
| T |
3392513 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
3392414 |
T |
|
| Q |
201 |
acacgagcaaccacagcatcagctaaacgatattttttggc |
241 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3392413 |
acacgagcaaccatggcatcagctaaacgatattttttggc |
3392373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 39399950 - 39399809
Alignment:
| Q |
97 |
ctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatc |
196 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| |||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39399950 |
ctcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaaaatt |
39399851 |
T |
|
| Q |
197 |
tttcacacgagcaaccacagcatcagctaaacgatatttttt |
238 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
39399850 |
ttccacacgagcaaccacggcatcagctaaacggtatttttt |
39399809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 578 - 878
Target Start/End: Complemental strand, 40412144 - 40411834
Alignment:
| Q |
578 |
aaaaaggtatctttcagttctaggaataatcatagcccaattagacttgaca--ggaactatgtcccctataagtgtcgcaaaataccaagcacaagatg |
675 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||||| |||||| | |||||||| |||| ||| | | | |||||| | |||||| ||||||| |||||| |
|
|
| T |
40412144 |
aaaaaggtatatttcactttcaggaagaatcatatcccaatcaaacttgacacaggaagtattttctcaataagttccacaaaatcccaagcataagatg |
40412045 |
T |
|
| Q |
676 |
ttatattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattttctcaacatcatcaaggataccaagattggtcataacgctgatctgctccaa |
775 |
Q |
| |
|
||| | |||||||||||||||||||| ||||| ||||||| ||||| ||| | | | | || | |||||| |||| ||| |||||||||||||||||| |
|
|
| T |
40412044 |
ttaaacggaaacagaaagaaaaaccttcatcaatgtcgtatttgattatcttagctttacgaacggtaccaaaattgttcaaaacgctgatctgctccaa |
40411945 |
T |
|
| Q |
776 |
-tgaaagacagtacgaagttgagaaacatgttgttgacgaactttc---acaacagaacg---ccacccttgctccatcttctccact-tttgacctaat |
867 |
Q |
| |
|
||||||| |||||| || ||| ||||||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
40411944 |
atgaaagaaagtacgcagctgacaaacatgttgttgacgaacattcacaacaacagaacgccaccacccttcctccatcttctccactctttgacctaat |
40411845 |
T |
|
| Q |
868 |
ttctttgcaat |
878 |
Q |
| |
|
||||||||||| |
|
|
| T |
40411844 |
ttctttgcaat |
40411834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 1163680 - 1163824
Alignment:
| Q |
97 |
ctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagtat |
195 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| ||| |
|
|
| T |
1163680 |
ctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatat |
1163778 |
T |
|
| Q |
196 |
ctttcacacgagcaaccacagcatcagctaaacgatattttttggc |
241 |
Q |
| |
|
|||| ||||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
1163779 |
ctttgacacgagcaactatggcattagctaaacgatattttttggc |
1163824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 1850059 - 1849912
Alignment:
| Q |
97 |
ctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagt |
193 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| | |||||||||| | |
|
|
| T |
1850059 |
ctccttcaggcaggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaat |
1849960 |
T |
|
| Q |
194 |
atctttcacacgagcaaccacagcatcagctaaacgatattttttggc |
241 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
1849959 |
atctttcacacgagcaactatggcattagctaaacgatattttttggc |
1849912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 331 - 587
Target Start/End: Complemental strand, 39168763 - 39168516
Alignment:
| Q |
331 |
ggaggacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatcagcatctaagaaacagtg |
430 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||| ||||| |||||||||| |||||| | |||| || | |
|
|
| T |
39168763 |
ggaggacaatatcaagaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaaggaaaaagc |
39168664 |
T |
|
| Q |
431 |
ggtcaacgtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacgttagga |
530 |
Q |
| |
|
||||| |||||||||||||| ||||||| | |||||||||||||||||||||| | ||||||||| ||| | || |||| ||| ||||| |
|
|
| T |
39168663 |
agtcaaggtaaatggatcaagtaaagtaatttttttggcaaccctagtgcatat---------aacaatatttgcaccgagagtagcagcaatattaggg |
39168573 |
T |
|
| Q |
531 |
ggcagaaagatcaaatccccgcagcaaatagggacgatttcaacagaaaaaaggtat |
587 |
Q |
| |
|
|||||||| |||||||| |||||| |||| ||||||||||||||| ||||| ||||| |
|
|
| T |
39168572 |
ggcagaaaaatcaaatctccgcagaaaattgggacgatttcaacaaaaaaatggtat |
39168516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 740 - 878
Target Start/End: Original strand, 1164332 - 1164472
Alignment:
| Q |
740 |
gataccaagattggtcataacgctgatctgctccaa-tgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccaccct |
838 |
Q |
| |
|
||||||||||| | || |||||||| ||||||||| ||||| | |||||| |||| ||||||||||||||||||||| |||||||||| |||||| ||| |
|
|
| T |
1164332 |
gataccaagatggttccaaacgctgacctgctccaaatgaaacaaagtacgcagttcagaaacatgttgttgacgaacattcacaacagcacgccatcct |
1164431 |
T |
|
| Q |
839 |
tgctccatcttctccacttt-tgacctaatttctttgcaat |
878 |
Q |
| |
|
| |||||||||| |||||| ||||||||||| ||| |||| |
|
|
| T |
1164432 |
tcctccatcttcgacactttctgacctaatttttttccaat |
1164472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 679 - 850
Target Start/End: Complemental strand, 1849495 - 1849323
Alignment:
| Q |
679 |
tattgaaacagaaagaaaaaccttgatcaacgtcgtatatgattttctcaacatcatcaaggataccaagattggtcataacgctgatctgctccaa-tg |
777 |
Q |
| |
|
|||||||||||||||| ||||||| ||| | || |||| ||||| || || | ||||||||||| |||| | || |||||||| ||||||||| || |
|
|
| T |
1849495 |
tattgaaacagaaagacaaaccttcatcgatgttgtatttgattctccgaatcttttcaaggataccgagatggttcgaaacgctgacctgctccaaatg |
1849396 |
T |
|
| Q |
778 |
aaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctccatcttc |
850 |
Q |
| |
|
||| | |||||| |||| ||||||||||||||||||||| |||||||||| || |||||| |||||||||| |
|
|
| T |
1849395 |
aaacaaagtacgcagttcagaaacatgttgttgacgaacattcacaacagcacaaaacccttcctccatcttc |
1849323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 520 - 594
Target Start/End: Complemental strand, 40596312 - 40596238
Alignment:
| Q |
520 |
caacgttaggaggcagaaagatcaaatccccgcagcaaatagggacgatttcaacagaaaaaaggtatctttcag |
594 |
Q |
| |
|
|||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
40596312 |
caaccttaggaggcagaaaaatcaaatccccgtagcaaatggggacgatttcaacagaaaaagtgtatctatcag |
40596238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 746 - 849
Target Start/End: Complemental strand, 3298936 - 3298832
Alignment:
| Q |
746 |
aagattggtcataacgctgatctgctccaa-tgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctcc |
844 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| | |||||| |||||| ||||||||||||||||||| |||| |||| | |||||||| |||| |
|
|
| T |
3298936 |
aagattggtccaaacgctgatctgctccaaatgaaacaaagtacgtagttgacaaacatgttgttgacgaacattcaaaacaccaacccacccttcctcc |
3298837 |
T |
|
| Q |
845 |
atctt |
849 |
Q |
| |
|
||||| |
|
|
| T |
3298836 |
atctt |
3298832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 749 - 849
Target Start/End: Complemental strand, 3391826 - 3391725
Alignment:
| Q |
749 |
attggtcataacgctgatctgctccaa-tgaaagacagtacgaagttgagaaacatgttgttgacgaactttcacaacagaacgccacccttgctccatc |
847 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| | |||||| |||||| ||||||||||||||||||| |||| |||| | |||||||| ||||||| |
|
|
| T |
3391826 |
attggtccaaacgctgatctgctccaaatgaaacaaagtacgtagttgacaaacatgttgttgacgaacattcaaaacaccaacccacccttcctccatc |
3391727 |
T |
|
| Q |
848 |
tt |
849 |
Q |
| |
|
|| |
|
|
| T |
3391726 |
tt |
3391725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 3299684 - 3299639
Alignment:
| Q |
16 |
cttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
61 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
3299684 |
cttcggcataactaattttggtgatcaaaatggcagcaggaaggtt |
3299639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 3392577 - 3392532
Alignment:
| Q |
16 |
cttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
61 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
3392577 |
cttcggcataactaattttggtgatcaaaatggcagcaggaaggtt |
3392532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 429
Target Start/End: Complemental strand, 40596486 - 40596393
Alignment:
| Q |
336 |
acaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatcagcatctaagaaacagt |
429 |
Q |
| |
|
||||||||||| ||| |||||| ||||||||| ||||| ||| |||| | ||||| |||| ||||||||||||||| ||| ||||| ||||| |
|
|
| T |
40596486 |
acaatatcgagcacagaatattccactaactgactcctagtgagtgaaggcgtgaaaagtgcattccagtactgatcaacatttaagatacagt |
40596393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 2e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 25912199 - 25912429
Alignment:
| Q |
8 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagac |
107 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||| |||| |
|
|
| T |
25912199 |
accattctcttcggcataactaatcttggtgatcaaaatggcagcatgaaggttgttattggtgttggtgttagctcctccttctcct---cctctagac |
25912295 |
T |
|
| Q |
108 |
aggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25912296 |
aggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgag |
25912395 |
T |
|
| Q |
208 |
caaccacagcatcagctaaacgatattttttggc |
241 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
25912396 |
caaccacatcatcagctaaacgatattttttggc |
25912429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 9e-88
Query Start/End: Original strand, 320 - 867
Target Start/End: Original strand, 25912508 - 25913058
Alignment:
| Q |
320 |
gttgtcctggaggaggacaatatcgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatcagcatct |
419 |
Q |
| |
|
||||||| ||||||||| |||| ||||||| |||||| |||||||||| |||| ||||| || | ||||| ||||| ||||||||||||||||| | |
|
|
| T |
25912508 |
gttgtcccggaggagga---tatcaagaacaatatattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttc |
25912604 |
T |
|
| Q |
420 |
aagaaacagtgggtcaacgtaaatggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaa |
519 |
Q |
| |
|
|||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| |
|
|
| T |
25912605 |
aagaaacaatgagtcaaggtaaatggatcaagtaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatatttacactgaaagaagcag |
25912704 |
T |
|
| Q |
520 |
caacgttaggaggcagaaagatcaaatccccgcagcaaatagggacgatttcaacagaaa---aaaggtatctttcagttctaggaataatcatagccca |
616 |
Q |
| |
|
|||| |||||||||||||| |||||||||| |||| |||| ||||||||||||||| ||| |||| ||| |||| |||| ||||||| |||| |
|
|
| T |
25912705 |
caacattaggaggcagaaaaatcaaatcccagcagaaaatggggacgatttcaacaaaaaaagaaagatatatttc------aggaggaatcatatccca |
25912798 |
T |
|
| Q |
617 |
attagacttgacaggaactatgtcccctataagtgtcgcaaaataccaagcacaagatgttatattgaaacagaaagaaaaaccttgatcaacgtcgtat |
716 |
Q |
| |
|
|| | || |||||||||||||||||||||||||| || |||||| ||| ||| |||||||| || ||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
25912799 |
atgaaacctgacaggaactatgtcccctataagtttcacaaaatgccatgcaaaagatgttctacggaaacagaaggaaaaaccttcatcaatgtcgtat |
25912898 |
T |
|
| Q |
717 |
atg---attttctcaacatcatcaa--ggataccaagattggtcataacgctgatctgctcc-aatgaaagacagtacgaagttgagaaacatgttgttg |
810 |
Q |
| |
|
|| ||| ||| | ||| | || | || || || || ||||||||||||||||| ||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
25912899 |
ttgaatattctcttagcattacgaacggtgtattaaaatgtctcgtaacgctgatctgctccaaatgaaagaaagtacgcagttgacaaacatgttgttg |
25912998 |
T |
|
| Q |
811 |
ac--gaactttcacaacagaacgccacccttgctccatcttctcca-cttttgacctaat |
867 |
Q |
| |
|
|| |||| ||||||||||| |||||||||| ||||||||||| || |||||||||||| |
|
|
| T |
25912999 |
acgagaacattcacaacagagcgccacccttcctccatcttcttcattttttgacctaat |
25913058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
| Q |
110 |
gtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagtt |
176 |
Q |
| |
|
||||||||||||||||| |||||| |||||||| |||||||| ||||||||| |||||||||||||| |
|
|
| T |
44444772 |
gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt |
44444838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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