View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5840-Insertion-5 (Length: 917)
Name: NF5840-Insertion-5
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840-Insertion-5 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 828; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 828; E-Value: 0
Query Start/End: Original strand, 9 - 915
Target Start/End: Original strand, 41522899 - 41523806
Alignment:
| Q |
9 |
cttggttgaaaatcgtaataggaaacatggagtgtaaaataataataataacattctaggtaagaagcaagactcaaagtaagcttcaaagtataaacaa |
108 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41522899 |
cttggttgaaaatcgtattaggaaacgtggagtgtaaaataataataataacattctaggtaagaagcaagactcaaagtaagcttcaaagtataaacaa |
41522998 |
T |
|
| Q |
109 |
taaatggtttcagaaggatgaaaaaacaacataaatagaaaagagcaagtatataatatatacttaacactttccaagagataagttcctaaagaggtca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41522999 |
taaatggtttcagaaggatgaaaaaacaacataaatagaaaagagcaagtatataatatatacttaacactttccaagagataagttcctaaagaggtcg |
41523098 |
T |
|
| Q |
209 |
aaagaatgatcattcacgccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataacta |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41523099 |
aaagaatgatcattcacgccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataacta |
41523198 |
T |
|
| Q |
309 |
cctaccactagaccctggcatctcaaccactttcttgagccttctagccttgaccaacaatcatgacacagttggtctacaatcagttctctaggaacat |
408 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
41523199 |
gctcccactagaccctggcatctcaaccactttcttgagccttctagccttgaccaacaatcatgacacaattggtctacaatcagttctctaggaacat |
41523298 |
T |
|
| Q |
409 |
ctctcctattctagtaaagttactaatgtttttgggctcctgaagcacagccctgtctcaaggctgaaatttgtgcttcgcctcattaatttatcttcca |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
41523299 |
ctctcctattctagtaaagttactaatgtttttgggctcctgaagcgcagccctgtctcaaggctgaaattagtgcttcgcctcattaatttatcttcca |
41523398 |
T |
|
| Q |
509 |
aagtagctttctcagcatgtttgttctgcaactgagtcaatacatgtcttgtccattgcatatggcgaagaaaaacctccctagaaccaaaatttatttg |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41523399 |
aagtagctttctcagcatgtttgttctgcaactgagtcaatacatgtcttgtcaattgcatatggtgaagaaaaacctccctagaaccaaaatttatttg |
41523498 |
T |
|
| Q |
609 |
aggttttacagttcatgtcaacgctacttccatttccataggaaaatcagtttcaggtaaaatgaaaaagtcaatagcttgcttgggttgagtaacatag |
708 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41523499 |
aggttttacagttcatgtcaacactacttccatttccataggaaaatcagtttcagctaaaatgaaaaagtcaatagcttgcttggattgagtaacatag |
41523598 |
T |
|
| Q |
709 |
aataaagatgtgtttcaatagtcaatttataaaacaagaaaatcatttaccagtccaatctacctagcaatctgatctaacatatatccgatcacacata |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||| |
|
|
| T |
41523599 |
aataaagatgtgtttcaatagtcaatttataaaacaagaaaatcatttaccagtccaatctaccaagcaatctgatctaacatttatctgatcacacata |
41523698 |
T |
|
| Q |
809 |
aatttaatatttatcaagtaacattaaaaaatgcatatctttataggaataagatatgcatgcataatttccatatacctgatgatgaa-cttgcacatc |
907 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
41523699 |
aattcaatatttatcaagtaacattaaaaaatgcatatctttataggaataaaatatgcatgcataatttccatatacctgatgatgaaccttgcacatc |
41523798 |
T |
|
| Q |
908 |
cttgttcc |
915 |
Q |
| |
|
|||||||| |
|
|
| T |
41523799 |
cttgttcc |
41523806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 9 - 464
Target Start/End: Original strand, 41513935 - 41514390
Alignment:
| Q |
9 |
cttggttgaaaatcgtaataggaaacatggagtgtaaaataataataataacattctaggtaagaagcaagactcaaagtaagcttcaaagtataaacaa |
108 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41513935 |
cttggttgaaaatcgttttaggaaacgtggagtgtaaaataataataataacattctaggtaagaagcaagactcaaagtaagcttcaaagtataaataa |
41514034 |
T |
|
| Q |
109 |
taaatggtttcagaaggatgaaaaaacaacataaatagaaaagagcaagtatataatatatacttaacactttccaagagataagttcctaaagaggtca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41514035 |
taaatggtttcagaaggatgaaaaaacaacataaatagaaaagagcaagtatataatatatactcaacactttccaagagataagttcctaaagaggtca |
41514134 |
T |
|
| Q |
209 |
aaagaatgatcattcacgccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataacta |
308 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41514135 |
aaagaatgatcattcacaccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataacta |
41514234 |
T |
|
| Q |
309 |
cctaccactagaccctggcatctcaaccactttcttgagccttctagccttgaccaacaatcatgacacagttggtctacaatcagttctctaggaacat |
408 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
41514235 |
gctcccactagaccctggcatctcaaccactttcttgagccttctagccttgaccaacaatcatgacacaattggtctagaatcagttctctaggaacat |
41514334 |
T |
|
| Q |
409 |
ctctcctattctagtaaagttactaatgtttttgggctcctgaagcacagccctgt |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41514335 |
ctctcctattctagtaaagttactaatgtttttgggctcctgaagcacagccctgt |
41514390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 718 - 915
Target Start/End: Original strand, 41514656 - 41514855
Alignment:
| Q |
718 |
gtgtttcaatagtcaatttataaaa-caagaaaatcatttaccagtccaatctacctagcaatctgatctaacatatatccgatcacacataaatttaat |
816 |
Q |
| |
|
||||||||||||||||| ||||||| ||| |||||||| |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
41514656 |
gtgtttcaatagtcaatctataaaaacaataaaatcatgtaccaggccaatctacctagcaatctgatcaaacatttatccgatcacacataaattcaat |
41514755 |
T |
|
| Q |
817 |
atttatcaagtaacattaaaaaatgcatatctttataggaataagatatgcatgcataatttccatatacctgatgatgaa-cttgcacatccttgttcc |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41514756 |
atttatcaagtaacattaaaaaatgcatatctttataggaataagagatgcattcatagtttccatatacctgatgatgaaccttgcacatccttgttcc |
41514855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 606 - 718
Target Start/End: Original strand, 41514390 - 41514502
Alignment:
| Q |
606 |
ttgaggttttacagttcatgtcaacgctacttccatttccataggaaaatcagtttcaggtaaaatgaaaaagtcaatagcttgcttgggttgagtaaca |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41514390 |
ttgaggttttacagttcatgtcaacgctacttccatttccataggaaaatcagtttcagctaaaatgaaagagtcaatagcttgcttgggttgagtaaca |
41514489 |
T |
|
| Q |
706 |
tagaataaagatg |
718 |
Q |
| |
|
| |||||||||| |
|
|
| T |
41514490 |
tgtaataaagatg |
41514502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 33080672 - 33080749
Alignment:
| Q |
9 |
cttggttgaaaatcgtaataggaaacatggagtgtaaaataataataataacattctaggtaagaagcaagactcaaagta |
89 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
33080672 |
cttggttgaaaatcattttaggaaacatggagtgtaaaataataataat---attctaggtaagaagcaagattcaaagta |
33080749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 189 - 353
Target Start/End: Original strand, 41507873 - 41508041
Alignment:
| Q |
189 |
ataagttcctaaagaggtcaaaagaatgatcattcacgccatctctttctaggtacgaagtaacctcccctacattaccactctcattcactactcgttc |
288 |
Q |
| |
|
||||| ||||||||||| ||||| || ||||| ||| ||||| |||||| | | |||||||||||||| ||| |||||||||||||| ||||| ||| |
|
|
| T |
41507873 |
ataagctcctaaagaggaaaaaaggataatcatccacaacatctgtttctaaattctaagtaacctcccctgcatcaccactctcattcagtactctttc |
41507972 |
T |
|
| Q |
289 |
acgacactactgaataactacctaccac----tagaccctggcatctcaaccactttcttgagccttct |
353 |
Q |
| |
|
||| ||||| |||||||| || |||| ||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
41507973 |
tcgatgctactaaataactaactcccacccattagaccctgccataacaaccactttcttgagccttct |
41508041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 246 - 345
Target Start/End: Original strand, 41517523 - 41517626
Alignment:
| Q |
246 |
aagtaacctcccctacattaccactctcattcactactcgttcacgacactactgaataacta----cctaccactagaccctggcatctcaaccacttt |
341 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| |||| ||| |||| || || |||||||| ||| ||||||||||||| ||| |||||||||| |
|
|
| T |
41517523 |
aagtaacctcccctgcataaccactctcattcagtactatttctcgacgctgctaaataactaactccctcccactagaccctgccataacaaccacttt |
41517622 |
T |
|
| Q |
342 |
cttg |
345 |
Q |
| |
|
|||| |
|
|
| T |
41517623 |
cttg |
41517626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 33080741 - 33080801
Alignment:
| Q |
93 |
ttcaaagtataaacaataaatggtttcagaaggatga-aaaaacaacataaatagaaaagagc |
154 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | || |||||||||| |||||||||||||| |
|
|
| T |
33080741 |
ttcaaagtataaactataaatggtttcagaa--aagagaaaaacaacaaaaatagaaaagagc |
33080801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 41468444 - 41468479
Alignment:
| Q |
89 |
aagcttcaaagtataaacaataaatggtttcagaag |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41468444 |
aagcttcaaagtacaaacaataaatggtttcagaag |
41468479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 809 - 896
Target Start/End: Original strand, 41469011 - 41469106
Alignment:
| Q |
809 |
aatttaatatttatcaagtaacattaaaaaatgcatatctttataggaataagata--------tgcatgcataatttccatatacctgatgatga |
896 |
Q |
| |
|
|||| ||||||||| |||||| ||||||||||||||| || |||||||||| | | ||||||||||||||| |||||||||||||||| |
|
|
| T |
41469011 |
aattcaatatttataaagtaatattaaaaaatgcataactacataggaataatagaataatagatgcatgcataatttcgatatacctgatgatga |
41469106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 867 - 896
Target Start/End: Complemental strand, 41703312 - 41703283
Alignment:
| Q |
867 |
catgcataatttccatatacctgatgatga |
896 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41703312 |
catgcataatttccatatacctgatgatga |
41703283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 2438703 - 2438645
Alignment:
| Q |
295 |
ctactgaataactacctaccactagaccctggcatctcaaccactttcttgagccttct |
353 |
Q |
| |
|
|||||||||||||| || | || |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
2438703 |
ctactgaataactaactcctacaagaccctgccatctcaaccactttattgagccttct |
2438645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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