View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5840-Insertion-6 (Length: 903)

Name: NF5840-Insertion-6
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5840-Insertion-6
NF5840-Insertion-6
[»] chr8 (5 HSPs)
chr8 (9-412)||(35877959-35878360)
chr8 (456-885)||(35878507-35878937)
chr8 (20-313)||(35870424-35870716)
chr8 (327-402)||(35877058-35877133)
chr8 (417-451)||(1370426-1370460)
[»] chr4 (4 HSPs)
chr4 (9-412)||(24452160-24452561)
chr4 (456-885)||(24452708-24453138)
chr4 (20-313)||(24444625-24444917)
chr4 (327-402)||(24451259-24451334)
[»] chr5 (1 HSPs)
chr5 (416-455)||(11773608-11773647)
[»] chr3 (4 HSPs)
chr3 (416-451)||(23553479-23553514)
chr3 (416-451)||(23553666-23553701)
chr3 (416-451)||(33389155-33389190)
chr3 (416-451)||(45292917-45292952)
[»] chr1 (1 HSPs)
chr1 (416-451)||(702375-702410)
[»] chr7 (1 HSPs)
chr7 (417-451)||(31289252-31289286)
[»] chr2 (1 HSPs)
chr2 (416-449)||(40209956-40209989)


Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Original strand, 35877959 - 35878360
Alignment:
Q  9 gatgtggttgcaaagtcatatcctttgctgcaggtaaaaaccggttcatcatgaagtcttgagcctgtttatcatcagtagaaagaggttttacacttgt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35877959 gatgtggttgcaaagtcatatcctttgctgcaggtaaaaaccggttcatcatgaagtcttgagcctgtttatcatcagtagaaagaggttttacacttgt 35878058  T
Q  109 ttgcatccaaattatccaacccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaggcatcatcttcattgtcgtcatcgtc 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35878059 ttgcatccaaattatccaagccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaggcatcatcttcattgtcgtcatcgtc 35878158  T
Q  209 atcctcttccaaattttgtagcttttcatccttttgtcctttgtcatgatctactttattcatgatgttacctaaagaatttcatttacttaagcaccta 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35878159 atcctcttccaaattttgtagcttttcatccttttgtcctttgtcatgatctactttattcatgatgttacctaaagaatttgatttacttaagcaccta 35878258  T
Q  309 aacttttgagacctgtaggttttatcttcagccatgtagtggttagttagagcaaaaaataatactacaaagtactaatccttttgagacctataagttt 408  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||    
T  35878259 aacttttgagacctataggttttatcttcagccatgtagtggttagttagagcaaaaaataatactaccaagtactaatcc--ttgagacctataggttt 35878356  T
Q  409 ctct 412  Q
    ||||    
T  35878357 ctct 35878360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 456 - 885
Target Start/End: Original strand, 35878507 - 35878937
Alignment:
Q  456 actatctctttcataagtatattttattaaatcatttttctttagctaaattttcttgcaaatgagcaaactagcacaagacgtgaaaattagttgcaaa 555  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35878507 actatctctttcataagtatattttattaaatcatatttttttagctaaattttcttgcaaatgagcaaactagcacaagacgtgaaaattagttgcaaa 35878606  T
Q  556 accagcatatacaacttactatatatactagtgaattgacactaaactaagttaagctactcttgaaaaacattattaatctataatttcaaattcggat 655  Q
    || ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35878607 actagcatatacaacttactata--tactagtaaattgacactaaactaagttaagctactcttgaaaaacattattaatctataatttcaaattcggat 35878704  T
Q  656 ttgttatggcatgtaacaatccttgttggtcctacttttctacaagtgagagtcactttcgtgaacatttttgttagtgaatcatgtgcaagtaagcatt 755  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35878705 ttgttatggcatgtaacaattcttgttggtcctacttttctacaagtgagagtcactttcgtgaacatttttgttagtgaatcatgtgcaagtaagcatt 35878804  T
Q  756 cttataccgaatgaaaatcaaaaaataaataaatgttaaat--tatatatgagtgtagatgtggtgtactggtgttatggaagttttgctgtgttggcat 853  Q
    || ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  35878805 ctcataccgaatgaaaatcaaaaaataaataaatgttaaattatatatatgagtgtagatgtggtgtactggtgttatggaagttttaccgtgttggcat 35878904  T
Q  854 tcccttgaaaagttttggatt-aattaagggta 885  Q
    ||||||||||||||||||||| |||||||||||    
T  35878905 tcccttgaaaagttttggattaaattaagggta 35878937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 35870424 - 35870716
Alignment:
Q  20 aaagtcatatcctttgctgcaggtaaaaaccggttcatcatgaagtcttgagcctgtttatcatcagtagaaagaggttttacacttgtttgcatccaaa 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||| ||| || ||||||||||||||||||||    
T  35870424 aaagtcatagcctttgctgcaggtaaaaaccggttcatcatgaattcttgagcttgtttgtcatctgtagaa-gagattctacacttgtttgcatccaaa 35870522  T
Q  120 ttatccaacccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaggcatcatcttcattgtcgtcatcgtcatcctcttcca 219  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  35870523 ttatccaaaccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaagcatcatcatcattgtcgtcatcgtcatcctcttcca 35870622  T
Q  220 aattttgtagcttttcatccttttgtcctttgtcatgatctactttattcatgatgttacctaaagaatttcatttacttaagcacctaaactt 313  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||    
T  35870623 aattttgtagcttttcatccttttgtcctttgttatgatctactttattcatgatgttacttaaagaatttgatttactcaaggacctaaactt 35870716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 327 - 402
Target Start/End: Original strand, 35877058 - 35877133
Alignment:
Q  327 gttttatcttcagccatgtagtggttagttagagcaaaaaataatactacaaagtactaatccttttgagacctat 402  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  35877058 gttttatcttcagccatgtagtggttacttagagcaaagaataatactactaagtactaatccttttgagacctat 35877133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 451
Target Start/End: Complemental strand, 1370460 - 1370426
Alignment:
Q  417 aggagtgatatttagacaaccaaaatcaaacaact 451  Q
    ||||||| |||||||||||||||||||||||||||    
T  1370460 aggagtgttatttagacaaccaaaatcaaacaact 1370426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 9 - 412
Target Start/End: Original strand, 24452160 - 24452561
Alignment:
Q  9 gatgtggttgcaaagtcatatcctttgctgcaggtaaaaaccggttcatcatgaagtcttgagcctgtttatcatcagtagaaagaggttttacacttgt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24452160 gatgtggttgcaaagtcatatcctttgctgcaggtaaaaaccggttcatcatgaagtcttgagcctgtttatcatcagtagaaagaggttttacacttgt 24452259  T
Q  109 ttgcatccaaattatccaacccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaggcatcatcttcattgtcgtcatcgtc 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24452260 ttgcatccaaattatccaagccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaggcatcatcttcattgtcgtcatcgtc 24452359  T
Q  209 atcctcttccaaattttgtagcttttcatccttttgtcctttgtcatgatctactttattcatgatgttacctaaagaatttcatttacttaagcaccta 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24452360 atcctcttccaaattttgtagcttttcatccttttgtcctttgtcatgatctactttattcatgatgttacctaaagaatttgatttacttaagcaccta 24452459  T
Q  309 aacttttgagacctgtaggttttatcttcagccatgtagtggttagttagagcaaaaaataatactacaaagtactaatccttttgagacctataagttt 408  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||||    
T  24452460 aacttttgagacctataggttttatcttcagccatgtagtggttagttagagcaaaaaataatactaccaagtactaatcc--ttgagacctataggttt 24452557  T
Q  409 ctct 412  Q
    ||||    
T  24452558 ctct 24452561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 456 - 885
Target Start/End: Original strand, 24452708 - 24453138
Alignment:
Q  456 actatctctttcataagtatattttattaaatcatttttctttagctaaattttcttgcaaatgagcaaactagcacaagacgtgaaaattagttgcaaa 555  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24452708 actatctctttcataagtatattttattaaatcatatttttttagctaaattttcttgcaaatgagcaaactagcacaagacgtgaaaattagttgcaaa 24452807  T
Q  556 accagcatatacaacttactatatatactagtgaattgacactaaactaagttaagctactcttgaaaaacattattaatctataatttcaaattcggat 655  Q
    || ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24452808 actagcatatacaacttactata--tactagtaaattgacactaaactaagttaagctactcttgaaaaacattattaatctataatttcaaattcggat 24452905  T
Q  656 ttgttatggcatgtaacaatccttgttggtcctacttttctacaagtgagagtcactttcgtgaacatttttgttagtgaatcatgtgcaagtaagcatt 755  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24452906 ttgttatggcatgtaacaattcttgttggtcctacttttctacaagtgagagtcactttcgtgaacatttttgttagtgaatcatgtgcaagtaagcatt 24453005  T
Q  756 cttataccgaatgaaaatcaaaaaataaataaatgttaaat--tatatatgagtgtagatgtggtgtactggtgttatggaagttttgctgtgttggcat 853  Q
    || ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  24453006 ctcataccgaatgaaaatcaaaaaataaataaatgttaaattatatatatgagtgtagatgtggtgtactggtgttatggaagttttaccgtgttggcat 24453105  T
Q  854 tcccttgaaaagttttggatt-aattaagggta 885  Q
    ||||||||||||||||||||| |||||||||||    
T  24453106 tcccttgaaaagttttggattaaattaagggta 24453138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 24444625 - 24444917
Alignment:
Q  20 aaagtcatatcctttgctgcaggtaaaaaccggttcatcatgaagtcttgagcctgtttatcatcagtagaaagaggttttacacttgtttgcatccaaa 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||| ||| || ||||||||||||||||||||    
T  24444625 aaagtcatagcctttgctgcaggtaaaaaccggttcatcatgaattcttgagcttgtttgtcatctgtagaa-gagattctacacttgtttgcatccaaa 24444723  T
Q  120 ttatccaacccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaggcatcatcttcattgtcgtcatcgtcatcctcttcca 219  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  24444724 ttatccaaaccacttacacataatgattctgttgaagacagtgtttctaaggcatctgaaaaagcatcatcatcattgtcgtcatcgtcatcctcttcca 24444823  T
Q  220 aattttgtagcttttcatccttttgtcctttgtcatgatctactttattcatgatgttacctaaagaatttcatttacttaagcacctaaactt 313  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||    
T  24444824 aattttgtagcttttcatccttttgtcctttgttatgatctactttattcatgatgttacttaaagaatttgatttactcaaggacctaaactt 24444917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 327 - 402
Target Start/End: Original strand, 24451259 - 24451334
Alignment:
Q  327 gttttatcttcagccatgtagtggttagttagagcaaaaaataatactacaaagtactaatccttttgagacctat 402  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||    
T  24451259 gttttatcttcagccatgtagtggttacttagagcaaagaataatactactaagtactaatccttttgagacctat 24451334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 455
Target Start/End: Original strand, 11773608 - 11773647
Alignment:
Q  416 gaggagtgatatttagacaaccaaaatcaaacaactattg 455  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  11773608 gaggagtgatatttggacaaccaaaatcaaacaattattg 11773647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 451
Target Start/End: Original strand, 23553479 - 23553514
Alignment:
Q  416 gaggagtgatatttagacaaccaaaatcaaacaact 451  Q
    |||||||||||||| |||||||||||||||||||||    
T  23553479 gaggagtgatatttggacaaccaaaatcaaacaact 23553514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 451
Target Start/End: Original strand, 23553666 - 23553701
Alignment:
Q  416 gaggagtgatatttagacaaccaaaatcaaacaact 451  Q
    |||||||||||||| |||||||||||||||||||||    
T  23553666 gaggagtgatatttggacaaccaaaatcaaacaact 23553701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 451
Target Start/End: Complemental strand, 33389190 - 33389155
Alignment:
Q  416 gaggagtgatatttagacaaccaaaatcaaacaact 451  Q
    |||||||||||||| |||||||||||||||||||||    
T  33389190 gaggagtgatattttgacaaccaaaatcaaacaact 33389155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 451
Target Start/End: Original strand, 45292917 - 45292952
Alignment:
Q  416 gaggagtgatatttagacaaccaaaatcaaacaact 451  Q
    |||||||||||||| |||||||||||||||||||||    
T  45292917 gaggagtgatatttggacaaccaaaatcaaacaact 45292952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 451
Target Start/End: Original strand, 702375 - 702410
Alignment:
Q  416 gaggagtgatatttagacaaccaaaatcaaacaact 451  Q
    |||||||||||||| |||||||||||||||||||||    
T  702375 gaggagtgatatttggacaaccaaaatcaaacaact 702410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 31289252 - 31289286
Alignment:
Q  417 aggagtgatatttagacaaccaaaatcaaacaact 451  Q
    ||||||||||||| |||||||||||||||||||||    
T  31289252 aggagtgatatttggacaaccaaaatcaaacaact 31289286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 449
Target Start/End: Original strand, 40209956 - 40209989
Alignment:
Q  416 gaggagtgatatttagacaaccaaaatcaaacaa 449  Q
    |||||||||||||| |||||||||||||||||||    
T  40209956 gaggagtgatatttggacaaccaaaatcaaacaa 40209989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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