View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5840-Insertion-7 (Length: 750)
Name: NF5840-Insertion-7
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840-Insertion-7 |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 590; Significance: 0; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 13 - 662
Target Start/End: Original strand, 83152 - 83801
Alignment:
| Q |
13 |
atacgtcgtcacacaggttcaattgatttaatcttctcattattaaatatgatatgatttactcatcaattatagatgatgcatagcaatgatactggat |
112 |
Q |
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| T |
83152 |
atacatcgtcacataggttcaattgatttaatcatctcattattaaatatgatatgatttacttgtcaattatagatgatgcatagcaatgatactggat |
83251 |
T |
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| Q |
113 |
tcaagtttaagctcttatgaattggtggatacggttacataattttagtgaatttctagtggcaggtttatttgcacttttgaatatgatacgtgcttca |
212 |
Q |
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| T |
83252 |
tcaagtttaagctcttatgaattggtggatacggttacataattttagtgaatttctagtggcaggtttatttgcacttttgaatatgatacgtgcttca |
83351 |
T |
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| Q |
213 |
tttgatggttattattttgtcatgatttttgtgtgtgtataacttcacatattcttaagccattaaaacatatgcatatgtggttttgtgatatacaggg |
312 |
Q |
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| T |
83352 |
tttgatggttattattttgtcatgatttttgtgtgtgtataacttcacatattcttaagccattaaaacatatgcatgtgtggttttgtgatatacaggc |
83451 |
T |
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| Q |
313 |
ttatgtgaacaaggttgaaatatttttctgcacactacagtcatttatgtggtctcttttacactttcatagtgatttttctaattttaaaatttggttc |
412 |
Q |
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| T |
83452 |
ttatgtgaacaaggttgaaatatttttctgcatactacagtcatttatgtggtctcttttacactttcatagtgatttttctaattttaaaatttggttc |
83551 |
T |
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| Q |
413 |
ttgtgcatatatgtaattgccatgagtgaacttaccttgtgatgcttatatatgtatgtttttgtgatttgagaaaattataaaagctgtacataattta |
512 |
Q |
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| T |
83552 |
ttgtgcatatatgtaattgccatgagtgaacttaccttgtgatgcttatatatgtatgtttttgtgatttgagaaaattataaaagcaatacataattta |
83651 |
T |
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| Q |
513 |
tataaggaaatgtaatattgagaaacttttcaataagtttgaatagtttaaagttaaactgttcagcattccatacaattatatgatgatacttgattga |
612 |
Q |
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| T |
83652 |
tatgaggaaatgtaatattgagaaacttttcaataagtttgaatagtttaaagttaaactgttcaggattccatacaattatatgatgatacttgattga |
83751 |
T |
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| Q |
613 |
agaaaattgataggaataatttgttggccaaagttgaacccatgactaat |
662 |
Q |
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| T |
83752 |
agaaaattgacaggcataatttgttcgccaaagttgaacccatgactaat |
83801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 675 - 749
Target Start/End: Original strand, 83858 - 83932
Alignment:
| Q |
675 |
ttatcataaattatttaaagtttgtttgatagtgtggtcatgagaatgaatttattataagtatcttagttcttt |
749 |
Q |
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| T |
83858 |
ttatcataaattatttaaagtttgtttgatagtgtggtcatgagaatgaatttattataagtattttagttcttt |
83932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 34233995 - 34234079
Alignment:
| Q |
157 |
ttagtgaatttctagtggcaggtttatttgcacttttgaatatgatacgtgcttcatttgatggttattattttgtcatgatttt |
241 |
Q |
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| T |
34233995 |
ttagtggatttctagtgtcaggtttatttgcacttctgaatatggcacgtgcttcatttgatggttattattttgtcatgatttt |
34234079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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