View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5840-Insertion-8 (Length: 728)
Name: NF5840-Insertion-8
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840-Insertion-8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 696; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 8 - 728
Target Start/End: Original strand, 11975401 - 11976121
Alignment:
| Q |
8 |
aatattgttggccacaagtttactacgtgtggttatgagtattgcacttgcaccattggacgtcattaatatcttgtccaaatcagagagcatctcgtcc |
107 |
Q |
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| T |
11975401 |
aatattgttggccacaagtttactacgtgtggttatgagaattgcacttgcaccattggacgtcattaatatcttgtccaaatcagagagcatctcgtcc |
11975500 |
T |
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| Q |
108 |
ccaagtatctcagttttcaaattatccagcacaacaaggtttccttttccgccgtcagtgtaagtagatgacatgtcagtggtattgaggaattccacat |
207 |
Q |
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| T |
11975501 |
ccaagtatctcagttttcaaattatccagcacaacaaggtttccttttccgccgtcagtgtaagtagatgacatgtcagtggtattgaggaattccacat |
11975600 |
T |
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| Q |
208 |
cataaatccaaatttgaaggccgaagtgagctttgacttgctcatcctcacaaataagacgggcaagttttgtcttccctattcctgcgaacccaacaat |
307 |
Q |
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| T |
11975601 |
cataaatccaaatttgaaggccgaagtgagctttgacttgctcatcctcacaaataagacgggcaagttttgtcttccctattcctgcgaacccaacaat |
11975700 |
T |
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| Q |
308 |
ggaaaccacagaaactttcccaacggattcagctcctgtgtggagcgggataagttgatctataatttcnnnnnnnctcccaactatagccggttccaac |
407 |
Q |
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| T |
11975701 |
ggaaaccacagaaactttcccaacggattcagctcctgtgtggagcgggataagttgatctataatttctttttttctcccaactatagccggttccaac |
11975800 |
T |
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| Q |
408 |
tccgtctcctcccccgtcttctcccatgcttcttgaggcggcatagttgcagtggtggtcgtggacaattcttttaaaacatctttgagatcttttatgg |
507 |
Q |
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| T |
11975801 |
tccgtctcctcccccgtcttctcccatgcttcttgaggcggcatagttgcagtggtggtcgtggacaattcttttaaaacatctttgagatcttttatgg |
11975900 |
T |
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| Q |
508 |
cattttgaattcttgagttgatggctttaagctgatgcttatgacgatcggcttgaaacggagagaaagttcttttctgaggcttaagaataccggcatc |
607 |
Q |
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| T |
11975901 |
cattttgaattcttgagttgatggctttaagctgatgcttatgacgatcggcttgaaacggagagaaagttcttttctgaggcttaagaataccggcatc |
11976000 |
T |
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| Q |
608 |
gagttcctccaccaatttgttcagatctttgagggcagttttaaggttggacagaacctcatgacgttggacgtggttcttaaccaggtcttggattttt |
707 |
Q |
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| T |
11976001 |
gagttcctccaccaatttgttcagatctttgagggcagttttaaggttggacagaacctcatgacgttggacgtggttcttaaccaggtcttggattttt |
11976100 |
T |
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| Q |
708 |
tcaagagaagttataagttgg |
728 |
Q |
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| T |
11976101 |
tcaagagaagttataagttgg |
11976121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 11730896 - 11730841
Alignment:
| Q |
237 |
gctttgacttgctcatcctcacaaataagacgggcaagttttgtcttccctattcc |
292 |
Q |
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| T |
11730896 |
gctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcc |
11730841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 11730452 - 11730395
Alignment:
| Q |
237 |
gctttgacttgctcatcctcacaaataagacgggcaagttttgtcttccctattcctg |
294 |
Q |
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| T |
11730452 |
gctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctg |
11730395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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