View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5840-Insertion-9 (Length: 667)

Name: NF5840-Insertion-9
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5840-Insertion-9
NF5840-Insertion-9
[»] chr4 (11 HSPs)
chr4 (359-667)||(54441465-54441769)
chr4 (9-127)||(54442269-54442387)
chr4 (119-221)||(54441895-54441983)
chr4 (95-138)||(16959142-16959185)
chr4 (95-148)||(8117181-8117234)
chr4 (85-114)||(20650790-20650819)
chr4 (95-128)||(44569207-44569240)
chr4 (86-138)||(8080532-8080584)
chr4 (99-139)||(23084113-23084153)
chr4 (86-138)||(23454806-23454858)
chr4 (88-148)||(53937749-53937809)
[»] chr5 (8 HSPs)
chr5 (84-138)||(34449447-34449501)
chr5 (96-179)||(34598338-34598421)
chr5 (100-138)||(4178085-4178123)
chr5 (95-185)||(19104306-19104396)
chr5 (85-138)||(21063900-21063953)
chr5 (96-149)||(33894682-33894735)
chr5 (99-139)||(25913790-25913830)
chr5 (95-139)||(32128327-32128371)
[»] chr8 (3 HSPs)
chr8 (89-138)||(32875196-32875245)
chr8 (88-174)||(6078915-6079001)
chr8 (103-139)||(42149483-42149519)
[»] chr6 (4 HSPs)
chr6 (95-139)||(5039426-5039470)
chr6 (95-174)||(34187780-34187859)
chr6 (89-138)||(12462448-12462497)
chr6 (95-148)||(26683130-26683183)
[»] chr2 (3 HSPs)
chr2 (98-174)||(1722146-1722222)
chr2 (87-138)||(45070679-45070730)
chr2 (92-145)||(4831577-4831630)
[»] chr3 (5 HSPs)
chr3 (95-161)||(47186405-47186471)
chr3 (93-138)||(3135765-3135810)
chr3 (95-128)||(42236068-42236101)
chr3 (96-148)||(160538-160590)
chr3 (86-138)||(19114072-19114124)
[»] scaffold0041 (1 HSPs)
scaffold0041 (85-138)||(28540-28593)
[»] chr7 (2 HSPs)
chr7 (95-180)||(1870511-1870596)
chr7 (86-138)||(44405992-44406044)
[»] scaffold0384 (1 HSPs)
scaffold0384 (95-139)||(7300-7344)
[»] chr1 (2 HSPs)
chr1 (88-128)||(10555591-10555631)
chr1 (82-138)||(36016981-36017037)


Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 359 - 667
Target Start/End: Complemental strand, 54441769 - 54441465
Alignment:
Q  359 gacacataaaaattcatataatattataaacattcgtgtgtgtaaaaatcatttagaaatttaaagatactcatcacctaacttaaaaacaaagaccaaa 458  Q
    ||||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54441769 gacacttaaaaattcatataatattataaacattcgtgt----aaaaatcatttagaaatttaaaaatactcatcacctaacttaaaaacaaagaccaaa 54441674  T
Q  459 agtatggacataaaattttggtaggaaccacaaatatatttgataggaaccacaatttatttagaaaataaattttatagggaccacaatcgtctaaata 558  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54441673 agtatggacataaaacttttgtaggaaccacaaatatatttgataggaaccacaatttatttagaaaataaattttatagggaccacaatcgtctaaata 54441574  T
Q  559 ttgtttcaacacgattccaataatacatattttaaaaatttgctccaaaccaagctatattggaattccccgcttcactttaccaccactcgttatccct 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  54441573 ttgtttcaacacgattccaataatacatattttaaaaatttgctccaaaccaagctatattggaattccccgcttcactttaccaccacccgttttccct 54441474  T
Q  659 acgacatgg 667  Q
    |||||||||    
T  54441473 acgacatgg 54441465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 54442387 - 54442269
Alignment:
Q  9 ttctttgcctatcggatgtttcaaaaaccaggaatctactgtgatgtattgcgcctctaagttttgcatgaaaatataataaaatcaagggttaaatatg 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54442387 ttctttgcctatcagatgtttcaaaaaccaggaatctactgtgatgtattgcgcctctaagttttgcatgaaaatataataaaattaagggttaaatatg 54442288  T
Q  109 tttttggttattataaata 127  Q
    |||||||||||||||||||    
T  54442287 tttttggttattataaata 54442269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 54441983 - 54441895
Alignment:
Q  119 ttataaatattacaactttttctttaagtcttattaaaattttgtttcgacttttactcttttaaaagtttctcattaccgcttaagatcttgtttttca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||    
T  54441983 ttataaatattacaactttttctttaagtcttattaaaattttgtttcg--------------aaaagtttctcattaccgcttaagatcttgtttttca 54441898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 16959142 - 16959185
Alignment:
Q  95 aagggttaaatatgtttttggttattataaatattacaactttt 138  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||    
T  16959142 aagggttaaatatgtttttggttcttataaatatatcaactttt 16959185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 148
Target Start/End: Original strand, 8117181 - 8117234
Alignment:
Q  95 aagggttaaatatgtttttggttattataaatattacaactttttctttaagtc 148  Q
    ||||||||||||||||||||||   |||||||||  ||||||||||||| ||||    
T  8117181 aagggttaaatatgtttttggtccctataaatataccaactttttcttttagtc 8117234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 20650819 - 20650790
Alignment:
Q  85 taataaaatcaagggttaaatatgtttttg 114  Q
    ||||||||||||||||||||||||||||||    
T  20650819 taataaaatcaagggttaaatatgtttttg 20650790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 44569207 - 44569240
Alignment:
Q  95 aagggttaaatatgtttttggttattataaatat 128  Q
    ||||||||||||||||||||||| ||||||||||    
T  44569207 aagggttaaatatgtttttggttcttataaatat 44569240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 8080584 - 8080532
Alignment:
Q  86 aataaaatcaagggttaaatatgtttttggttattataaatattacaactttt 138  Q
    |||||||| ||||||||||||||||||||||   |||||||||  ||||||||    
T  8080584 aataaaattaagggttaaatatgtttttggtccctataaatatatcaactttt 8080532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 23084153 - 23084113
Alignment:
Q  99 gttaaatatgtttttggttattataaatattacaacttttt 139  Q
    ||||||||||||||||||  ||||||||||| |||||||||    
T  23084153 gttaaatatgtttttggtccttataaatattccaacttttt 23084113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 23454858 - 23454806
Alignment:
Q  86 aataaaatcaagggttaaatatgtttttggttattataaatattacaactttt 138  Q
    |||| ||| |||||||||||||||||||||||  |||||||||  ||||||||    
T  23454858 aatagaataaagggttaaatatgtttttggttcctataaatatgtcaactttt 23454806  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 53937809 - 53937749
Alignment:
Q  88 taaaatcaagggttaaatatgtttttggttattataaatattacaactttttctttaagtc 148  Q
    |||||| ||||||||||||||||||| ||  ||||||||||  ||||||||| ||| ||||    
T  53937809 taaaataaagggttaaatatgttttttgtccttataaatataccaactttttattttagtc 53937749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 34449501 - 34449447
Alignment:
Q  84 ataataaaatcaagggttaaatatgtttttggttattataaatattacaactttt 138  Q
    |||||||||||||||||||||||||||||||||   |||||||||  ||||||||    
T  34449501 ataataaaatcaagggttaaatatgtttttggtccctataaatataccaactttt 34449447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 34598421 - 34598338
Alignment:
Q  96 agggttaaatatgtttttggttattataaatattacaactttttctttaagtcttattaaaattttgtttcgacttttactctt 179  Q
    |||||||||||| ||||||||   |||||||||  ||||||||| ||| |||||| ||||||||||  ||| ||||||| ||||    
T  34598421 agggttaaatatctttttggtccctataaatatgtcaactttttgttttagtctttttaaaattttccttcaacttttagtctt 34598338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 4178085 - 4178123
Alignment:
Q  100 ttaaatatgtttttggttattataaatattacaactttt 138  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  4178085 ttaaatatgtttttggttcttataaatatttcaactttt 4178123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 19104396 - 19104306
Alignment:
Q  95 aagggttaaatatgtttttggttattataaatattacaactttttctttaagtcttattaaaattttgtttcgacttttactcttttaaaa 185  Q
    |||||||||||||||||||||||  |||||||||  ||||||||  ||| ||||  | |||||||||  ||| ||||||| ||| ||||||    
T  19104396 aagggttaaatatgtttttggttcctataaatataccaacttttcgttttagtcccactaaaattttccttcaacttttagtctcttaaaa 19104306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 21063953 - 21063900
Alignment:
Q  85 taataaaatcaagggttaaatatgtttttggttattataaatattacaactttt 138  Q
    ||||||||  |||||||||||||||||||||| | |||||||||  ||||||||    
T  21063953 taataaaaataagggttaaatatgtttttggtcactataaatatgtcaactttt 21063900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 33894735 - 33894682
Alignment:
Q  96 agggttaaatatgtttttggttattataaatattacaactttttctttaagtct 149  Q
    ||||||||||||||||||||||  |||||||||  ||||||||| ||| |||||    
T  33894735 agggttaaatatgtttttggttcctataaatatatcaactttttgttttagtct 33894682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 25913830 - 25913790
Alignment:
Q  99 gttaaatatgtttttggttattataaatattacaacttttt 139  Q
    ||||||||||||||||||| ||||||||||  |||||||||    
T  25913830 gttaaatatgtttttggtttttataaatatatcaacttttt 25913790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 32128371 - 32128327
Alignment:
Q  95 aagggttaaatatgtttttggttattataaatattacaacttttt 139  Q
    ||||||||||||||||||||||| |||||| |||  |||||||||    
T  32128371 aagggttaaatatgtttttggttcttataagtataccaacttttt 32128327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 32875196 - 32875245
Alignment:
Q  89 aaaatcaagggttaaatatgtttttggttattataaatattacaactttt 138  Q
    |||||| |||||||||||||||||||||| ||||||||||  ||||||||    
T  32875196 aaaatctagggttaaatatgtttttggttcttataaatatgtcaactttt 32875245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 6078915 - 6079001
Alignment:
Q  88 taaaatcaagggttaaatatgtttttggttattataaatattacaactttttctttaagtcttattaaaattttgtttcgactttta 174  Q
    |||||| ||| ||||||||||||||||||   |||||||||  |||||||| |||| |||||   ||||||||| |||| |||||||    
T  6078915 taaaatgaagagttaaatatgtttttggtccctataaatatgtcaacttttccttttagtctctctaaaattttctttcaactttta 6079001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 42149483 - 42149519
Alignment:
Q  103 aatatgtttttggttattataaatattacaacttttt 139  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  42149483 aatatgtttttggttcttataaatattccaacttttt 42149519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 5039470 - 5039426
Alignment:
Q  95 aagggttaaatatgtttttggttattataaatattacaacttttt 139  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||    
T  5039470 aagggttaaatatgtttttggttcttataaatataccaacttttt 5039426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 34187780 - 34187859
Alignment:
Q  95 aagggttaaatatgtttttggttattataaatattacaactttttctttaagtcttattaaaattttgtttcgactttta 174  Q
    |||||||||||||||||| ||||  |||||||||  ||||||||| ||| ||||    |||||||| |||||||||||||    
T  34187780 aagggttaaatatgttttcggttcctataaatatatcaactttttattttagtccctctaaaatttcgtttcgactttta 34187859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 12462497 - 12462448
Alignment:
Q  89 aaaatcaagggttaaatatgtttttggttattataaatattacaactttt 138  Q
    ||||||||||||||||||| ||||||||  |||||||||| |||| ||||    
T  12462497 aaaatcaagggttaaatatctttttggtccttataaatataacaaatttt 12462448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 26683183 - 26683130
Alignment:
Q  95 aagggttaaatatgtttttggttattataaatattacaactttttctttaagtc 148  Q
    ||||||||||||||||||||||   ||||||||| |||||||||| ||| ||||    
T  26683183 aagggttaaatatgtttttggtccctataaatataacaactttttgttttagtc 26683130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 1722222 - 1722146
Alignment:
Q  98 ggttaaatatgtttttggttattataaatattacaactttttctttaagtcttattaaaattttgtttcgactttta 174  Q
    |||||||||||||||||||  ||||||||||  ||||||||| ||| |||||  ||||||||||  ||| |||||||    
T  1722222 ggttaaatatgtttttggtccttataaatatatcaactttttgttttagtctctttaaaattttccttcaactttta 1722146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 45070730 - 45070679
Alignment:
Q  87 ataaaatcaagggttaaatatgtttttggttattataaatattacaactttt 138  Q
    ||||||||||||||||||||||||||||||   |||||||||  ||||||||    
T  45070730 ataaaatcaagggttaaatatgtttttggtccctataaatataccaactttt 45070679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 4831630 - 4831577
Alignment:
Q  92 atcaagggttaaatatgtttttggttattataaatattacaactttttctttaa 145  Q
    ||||| |||||||||||||||||||  ||||||||||  ||||||||| |||||    
T  4831630 atcaaaggttaaatatgtttttggtccttataaatatatcaactttttatttaa 4831577  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 47186405 - 47186471
Alignment:
Q  95 aagggttaaatatgtttttggttattataaatattacaactttttctttaagtcttattaaaatttt 161  Q
    ||||||||||||||||||| ||| ||||||||||  ||||||||  ||| |||||  ||||||||||    
T  47186405 aagggttaaatatgtttttcgttcttataaatataccaacttttcgttttagtctctttaaaatttt 47186471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 3135765 - 3135810
Alignment:
Q  93 tcaagggttaaatatgtttttggttattataaatattacaactttt 138  Q
    ||||||||||||||||||||||||  ||||||||||  ||||||||    
T  3135765 tcaagggttaaatatgtttttggtccttataaatataccaactttt 3135810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 42236068 - 42236101
Alignment:
Q  95 aagggttaaatatgtttttggttattataaatat 128  Q
    ||||||||||||||||||||||| ||||||||||    
T  42236068 aagggttaaatatgtttttggttcttataaatat 42236101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 160538 - 160590
Alignment:
Q  96 agggttaaatatgtttttggttattataaatattacaactttttctttaagtc 148  Q
    |||||||||||||||||||||  ||||||||||  ||||||||| ||| ||||    
T  160538 agggttaaatatgtttttggtccttataaatataccaactttttgttttagtc 160590  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 19114124 - 19114072
Alignment:
Q  86 aataaaatcaagggttaaatatgtttttggttattataaatattacaactttt 138  Q
    |||||||| ||| ||||||||||||||||||  ||||||||||  ||||||||    
T  19114124 aataaaattaagagttaaatatgtttttggtccttataaatatatcaactttt 19114072  T

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Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 28593 - 28540
Alignment:
Q  85 taataaaatcaagggttaaatatgtttttggttattataaatattacaactttt 138  Q
    ||||||||| ||||||||||||||||||||||   |||||||||  ||||||||    
T  28593 taataaaataaagggttaaatatgtttttggtccctataaatatgtcaactttt 28540  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 1870511 - 1870596
Alignment:
Q  95 aagggttaaatatgtttttggttattataaatattacaactttttctttaagtcttattaaaattttgtttcgacttttactcttt 180  Q
    ||||||||||||| |||||  ||  |||||||||  ||||||||| ||| | || | |||||||||| |||| |||||||||||||    
T  1870511 aagggttaaatatattttttattcctataaatatgtcaactttttgttttaatccttttaaaattttctttcaacttttactcttt 1870596  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 44406044 - 44405992
Alignment:
Q  86 aataaaatcaagggttaaatatgtttttggttattataaatattacaactttt 138  Q
    |||||||| ||||||||||||||||||| ||  ||||||||||  ||||||||    
T  44406044 aataaaataaagggttaaatatgtttttagtccttataaatataccaactttt 44405992  T

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Target: scaffold0384 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 7344 - 7300
Alignment:
Q  95 aagggttaaatatgtttttggttattataaatattacaacttttt 139  Q
    |||||||||||||||||||||||  |||||||||  |||||||||    
T  7344 aagggttaaatatgtttttggttcctataaatataccaacttttt 7300  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 10555591 - 10555631
Alignment:
Q  88 taaaatcaagggttaaatatgtttttggttattataaatat 128  Q
    |||||| ||||||||||||||||||||||  ||||||||||    
T  10555591 taaaataaagggttaaatatgtttttggtccttataaatat 10555631  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 36016981 - 36017037
Alignment:
Q  82 atataataaaatcaagggttaaatatgtttttggttattataaatattacaactttt 138  Q
    ||||||| |||| ||||||||||||||||||| ||  ||||||||||  ||||||||    
T  36016981 atataattaaataaagggttaaatatgtttttagtccttataaatatgtcaactttt 36017037  T

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