View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5840_high_11 (Length: 339)
Name: NF5840_high_11
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840_high_11 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0014 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 5 - 328
Target Start/End: Original strand, 83152 - 83475
Alignment:
| Q |
5 |
atacgtcgtcacacaggttcaattgatttaatcttctcattattaaatatgatatgatttactcatcaattatagatgatgcatagcaatgatactggat |
104 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
83152 |
atacatcgtcacataggttcaattgatttaatcatctcattattaaatatgatatgatttacttgtcaattatagatgatgcatagcaatgatactggat |
83251 |
T |
|
| Q |
105 |
tcaagtttaagctcttatgaattggtggatacggttacataattttagtgaatttctagtggcaggtttatttgcacttttgaatatgatacgtgcttca |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
83252 |
tcaagtttaagctcttatgaattggtggatacggttacataattttagtgaatttctagtggcaggtttatttgcacttttgaatatgatacgtgcttca |
83351 |
T |
|
| Q |
205 |
tttgatggttattattttgtcatgatttttgtgtgtgtataacttcacatattcttaagccattaaaacatatgcatatgtggttttgtgatatacaggg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
83352 |
tttgatggttattattttgtcatgatttttgtgtgtgtataacttcacatattcttaagccattaaaacatatgcatgtgtggttttgtgatatacaggc |
83451 |
T |
|
| Q |
305 |
ttatgtgaacaaggttgaaatatt |
328 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
83452 |
ttatgtgaacaaggttgaaatatt |
83475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 34233995 - 34234079
Alignment:
| Q |
149 |
ttagtgaatttctagtggcaggtttatttgcacttttgaatatgatacgtgcttcatttgatggttattattttgtcatgatttt |
233 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34233995 |
ttagtggatttctagtgtcaggtttatttgcacttctgaatatggcacgtgcttcatttgatggttattattttgtcatgatttt |
34234079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University