View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5840_high_15 (Length: 316)

Name: NF5840_high_15
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5840_high_15
NF5840_high_15
[»] chr5 (1 HSPs)
chr5 (16-305)||(21911428-21911717)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 21911428 - 21911717
Alignment:
Q  16 cattttataggttagatagctagatacataaatgatccaatattgataaattttgcttgctaaaaacaaatgattgtaggtttatataaaatcaatgact 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21911428 cattttataggttagatagctagatacataaatgatccaatattgataaattttgcttgttaaaaacaaatgattgtaggtttatataaaatcaatgact 21911527  T
Q  116 ttcaaatttttactctgaaattatgtataaagataattgactctgataaaattcaaaaatgattttaatgcatagtgggttgccaaatccacaagatggt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21911528 ttcaaatttttactctgaaattatgtataaagataattgactctgataaaattcaaaaatgattttaatgcatagtgggttgccaaatccacaagatggt 21911627  T
Q  216 tactaattaaggcaagcattttccttctgcccattggtgaagtccttcaagttcaagttaatcggagccagttaacttttataaattcat 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21911628 tactaattaaggcaagcattttccttctgcccattggtgaagtccttcaagttcaagttaatcggagccagttaacttttataaattcat 21911717  T

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