View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5840_high_16 (Length: 313)

Name: NF5840_high_16
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5840_high_16
NF5840_high_16
[»] chr5 (13 HSPs)
chr5 (18-252)||(39726364-39726598)
chr5 (18-252)||(39879760-39879994)
chr5 (18-252)||(38987651-38987879)
chr5 (18-251)||(40418230-40418457)
chr5 (32-251)||(39168793-39169012)
chr5 (114-251)||(3299480-3299620)
chr5 (114-251)||(3392373-3392513)
chr5 (107-248)||(39399809-39399950)
chr5 (107-251)||(1163680-1163824)
chr5 (107-251)||(1849912-1850059)
chr5 (26-71)||(3299639-3299684)
chr5 (26-71)||(3392532-3392577)
chr5 (273-301)||(39726315-39726343)
[»] chr4 (2 HSPs)
chr4 (18-251)||(25912199-25912429)
chr4 (120-186)||(44444772-44444838)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 39726598 - 39726364
Alignment:
Q  18 accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39726598 accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagac 39726499  T
Q  118 aggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39726498 aggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag 39726399  T
Q  218 caaccacagcatcagctaaacgatattttttggcg 252  Q
    |||||||||||||||||||||||||||||||||||    
T  39726398 caaccacagcatcagctaaacgatattttttggcg 39726364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 39879994 - 39879760
Alignment:
Q  18 accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39879994 accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagac 39879895  T
Q  118 aggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39879894 aggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag 39879795  T
Q  218 caaccacagcatcagctaaacgatattttttggcg 252  Q
    |||||||||||||||||||||||||||||||||||    
T  39879794 caaccacagcatcagctaaacgatattttttggcg 39879760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 38987879 - 38987651
Alignment:
Q  18 accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||    
T  38987879 accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcct------ccagac 38987786  T
Q  118 aggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987785 aggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag 38987686  T
Q  218 caaccacagcatcagctaaacgatattttttggcg 252  Q
    |||||||||||||||||||||||||||||||||||    
T  38987685 caaccacagcatcagctaaacgatattttttggcg 38987651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 40418457 - 40418230
Alignment:
Q  18 accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagac 117  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||      ||||||    
T  40418457 accattctcttcggcataactaatcttggtgatcaaaatggcagcaggaaggttgatattgatgttggtgtcagctcctccttctcct------ccagac 40418364  T
Q  118 aggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40418363 aggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgag 40418264  T
Q  218 caaccacagcatcagctaaacgatattttttggc 251  Q
    ||||||||||||||||||||| ||||||||||||    
T  40418263 caaccacagcatcagctaaacaatattttttggc 40418230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 32 - 251
Target Start/End: Complemental strand, 39169012 - 39168793
Alignment:
Q  32 cataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaag 131  Q
    |||||||| ||||| | |||||||| ||||||||||||| |  |||| | ||||||| |||||||||| || ||   | |||||||| ||||||||||||    
T  39169012 cataactactcttggtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttctttacgtccagacaagtcataaccaag 39168913  T
Q  132 agcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatca 231  Q
    ||||| |||||||| |||||| ||| |||| ||||||||  |||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||    
T  39168912 agcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatca 39168813  T
Q  232 gctaaacgatattttttggc 251  Q
    ||||| ||||||||||||||    
T  39168812 gctaaccgatattttttggc 39168793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 3299620 - 3299480
Alignment:
Q  114 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 210  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  3299620 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 3299521  T
Q  211 acacgagcaaccacagcatcagctaaacgatattttttggc 251  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  3299520 acacgagcaaccatggcatcagctaaacgatattttttggc 3299480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 3392513 - 3392373
Alignment:
Q  114 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 210  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  3392513 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 3392414  T
Q  211 acacgagcaaccacagcatcagctaaacgatattttttggc 251  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  3392413 acacgagcaaccatggcatcagctaaacgatattttttggc 3392373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 107 - 248
Target Start/End: Complemental strand, 39399950 - 39399809
Alignment:
Q  107 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatc 206  Q
    |||||||||||| ||||||||||||||||| |||||||| |||||| ||| |||| |||||||||||||||||||||||||||||||||||||||  ||     
T  39399950 ctcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaaaatt 39399851  T
Q  207 tttcacacgagcaaccacagcatcagctaaacgatatttttt 248  Q
    || ||||||||||||||| |||||||||||||| ||||||||    
T  39399850 ttccacacgagcaaccacggcatcagctaaacggtatttttt 39399809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 107 - 251
Target Start/End: Original strand, 1163680 - 1163824
Alignment:
Q  107 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagtat 205  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| |||    
T  1163680 ctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatat 1163778  T
Q  206 ctttcacacgagcaaccacagcatcagctaaacgatattttttggc 251  Q
    |||| ||||||||||| |  |||| |||||||||||||||||||||    
T  1163779 ctttgacacgagcaactatggcattagctaaacgatattttttggc 1163824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 107 - 251
Target Start/End: Complemental strand, 1850059 - 1849912
Alignment:
Q  107 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagt 203  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||| |||||||  |||||||||||||||||||||||||||   | |||||||||| |    
T  1850059 ctccttcaggcaggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaat 1849960  T
Q  204 atctttcacacgagcaaccacagcatcagctaaacgatattttttggc 251  Q
    |||||||||||||||||| |  |||| |||||||||||||||||||||    
T  1849959 atctttcacacgagcaactatggcattagctaaacgatattttttggc 1849912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 3299684 - 3299639
Alignment:
Q  26 cttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt 71  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||    
T  3299684 cttcggcataactaattttggtgatcaaaatggcagcaggaaggtt 3299639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 3392577 - 3392532
Alignment:
Q  26 cttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt 71  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||    
T  3392577 cttcggcataactaattttggtgatcaaaatggcagcaggaaggtt 3392532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 273 - 301
Target Start/End: Complemental strand, 39726343 - 39726315
Alignment:
Q  273 cttcttctccttgttctcctccaccacct 301  Q
    |||||||||||||||||||||||||||||    
T  39726343 cttcttctccttgttctcctccaccacct 39726315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 25912199 - 25912429
Alignment:
Q  18 accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagac 117  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||   |||| ||||    
T  25912199 accattctcttcggcataactaatcttggtgatcaaaatggcagcatgaaggttgttattggtgttggtgttagctcctccttctcct---cctctagac 25912295  T
Q  118 aggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgag 217  Q
    |||||||||||||||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25912296 aggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgag 25912395  T
Q  218 caaccacagcatcagctaaacgatattttttggc 251  Q
    |||||||| |||||||||||||||||||||||||    
T  25912396 caaccacatcatcagctaaacgatattttttggc 25912429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
Q  120 gtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagtt 186  Q
    ||||||||||||||||| |||||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 44444838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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