View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5840_high_21 (Length: 264)
Name: NF5840_high_21
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 19493748 - 19494005
Alignment:
| Q |
1 |
cgatggaaagagtgagagtgtgattcatttgacgctttccgtgaataagtctgatgatttcggtggcgctgcgaccggtattgctcggagccgcaaagat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19493748 |
cgatggaaagagtgagagtgtgattcatttgacgctttccgtgaataagtctgatgatttcggtggcgctgcgactggtattgctcggagccgcaaagat |
19493847 |
T |
|
| Q |
101 |
ggaacggtagaatttgggctaattgtgaagtctttgtttaagtacaaaaacaggtgggctcagtccgactggaggcctatgaaggttgtttgcaacccac |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19493848 |
ggaacggtggaatttgggctaattgtgaagtctttgtttaagtacaaaaacaggtgggctcagtccgactggaggcctatgaaggttgtttgcaacccac |
19493947 |
T |
|
| Q |
201 |
tcaagtttgcagtttctccaaatgacaacaacacaacaaaccctgggattttcttgga |
258 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19493948 |
tcaagtttgcagtttctccaaatgacaacaacacaacaaaccctgggattttattgga |
19494005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 80 - 258
Target Start/End: Original strand, 19523730 - 19523908
Alignment:
| Q |
80 |
attgctcggagccgcaaagatggaacggtagaatttgggctaattgtgaagtctttgtttaagtacaaaaacaggtgggctcagtccgactggaggccta |
179 |
Q |
| |
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||||||| |||||||||| |||||| ||| || |||||||| |||||| | |||||||||||||||| |||||||||||||||||| | |||| || |
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| T |
19523730 |
attgctctgagccgcaaaaatggaatggtggagtttgggctgattgtgtcggctttgtttaagtacaagaacaggtgggctcagtcccaatggacatctt |
19523829 |
T |
|
| Q |
180 |
tgaaggttgtttgcaacccactcaagtttgcagtttctccaaatgacaacaacacaacaaaccctgggattttcttgga |
258 |
Q |
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| T |
19523830 |
taaaggctgtttgcaacccactcaagtttgcagtttctccaaatgactataacacaacaacccctgggattttgttgga |
19523908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 47 - 252
Target Start/End: Original strand, 19530735 - 19530940
Alignment:
| Q |
47 |
aagtctgatgatttcggtggcgctgcgaccggtattgctcggagccgcaaagatggaacggtagaatttgggctaattgtgaagtctttgtttaagtaca |
146 |
Q |
| |
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||||||||||||||||| || | || |||| ||||||| |||||||||| |||||| ||| || |||||||| |||||| ||||||||||||||| |
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| T |
19530735 |
aagtctgatgatttcggaggtgtggccaccgccattgctcagagccgcaaaaatggaatggtggagtttgggctgattgtgtcagctttgtttaagtaca |
19530834 |
T |
|
| Q |
147 |
aaaacaggtgggctcagtccgactggaggcctatgaaggttgtttgcaacccactcaagtttgcagtttctccaaatgacaacaacacaacaaaccctgg |
246 |
Q |
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| |||||||||| ||||||| | |||| || | |||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
19530835 |
agaacaggtgggatcagtccaaatggacatctttaaaggctgtttgcaaaccactcaagtttgcagtttctccaaatgactacaacacaacaatccctgg |
19530934 |
T |
|
| Q |
247 |
gatttt |
252 |
Q |
| |
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||||| |
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| T |
19530935 |
tatttt |
19530940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 19125279 - 19125121
Alignment:
| Q |
81 |
ttgctcggagccgcaaagatggaacggtagaatttgggctaattgtgaagtctttgtttaagtacaaaaacaggtgggctcagtccgactggaggcctat |
180 |
Q |
| |
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|||||| ||| ||||||||||||| ||| || |||||||| |||||| |||||||||||||||| ||||| | |||| |||||||||| || | |
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| T |
19125279 |
ttgctctgaggcgcaaagatggaagggtggagtttgggctgattgtgtcaactttgtttaagtacaagaacagattttctcattccgactggacatcttt |
19125180 |
T |
|
| Q |
181 |
gaaggttgtttgcaacccactcaagtttgcagtttctccaaatgacaacaacacaacaa |
239 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||||| |
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| T |
19125179 |
gaaggttgtttgcaacccactcaaatttgcagtttctcgaaatgtctacaacacaacaa |
19125121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 19501784 - 19502033
Alignment:
| Q |
15 |
agagtgtgattcatttgacgctttccgtgaataagtctgatgatttcggtggcgctgcgaccggtattgctcggagccgcaaagatggaacggtagaatt |
114 |
Q |
| |
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|||| ||||||||| ||||| | || ||||| ||| || |||||| || ||||| |||||| | ||||||| ||||||||||||||||| || || || |
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| T |
19501784 |
agagcgtgattcatatgacgttgtcggtgaacaagccttctgattttggcggcgcggcgaccagcattgctcagagccgcaaagatggaagagtggagtt |
19501883 |
T |
|
| Q |
115 |
tgggctaattgtgaagtctttgtttaagtacaaaaacaggtgggctcagtccgactggaggcctatgaaggttgtttgcaacccactcaagtttgcagtt |
214 |
Q |
| |
|
|||||| ||| || |||||| |||| || || ||||| | | || |||| |||| | || |||||||||||||||| |||||||| |||| |||| |
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| T |
19501884 |
tgggctcattctgtcatctttgattaaatataagaacagtatgtcgcattccggctgggagtctctgaaggttgtttgcaatccactcaaatttggagtt |
19501983 |
T |
|
| Q |
215 |
tctccaaatga---caac---aacacaacaaaccctgggattttcttgga |
258 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| ||||| |
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| T |
19501984 |
tctccaaatgacttcaacacaaacacaacaaaccctgggattttattgga |
19502033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 19130522 - 19130460
Alignment:
| Q |
159 |
ctcagtccgactggaggcctatgaaggttgtttgcaacccactcaagtttgcagtttctccaa |
221 |
Q |
| |
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|||| |||||||||| || ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19130522 |
ctcattccgactggacatctttgaaggttgtttgcaacccactcaaatttgcagtttctccaa |
19130460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 19517560 - 19517456
Alignment:
| Q |
16 |
gagtgtgattcatttgacgctttccgtgaataagtctgatgatttcggtggcgctgcgaccggtattgctcggagccgcaaagatggaacggtagaattt |
115 |
Q |
| |
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||||||||||||| ||||| | || ||||| ||| || |||||| |||||||| || || | ||||||| ||||||||||||||||||||| || ||| |
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| T |
19517560 |
gagtgtgattcatatgacgttgtcggtgaacaagcctattgattttggtggcgccgcagccagcattgctcagagccgcaaagatggaacggtggagttt |
19517461 |
T |
|
| Q |
116 |
gggct |
120 |
Q |
| |
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||||| |
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| T |
19517460 |
gggct |
19517456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 19495907 - 19495959
Alignment:
| Q |
206 |
tttgcagtttctccaaatgacaacaacacaacaaaccctgggattttcttgga |
258 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || ||| ||||| ||||| |
|
|
| T |
19495907 |
tttgcagtttctccaaatgactacaacacaacaacccgtggtattttgttgga |
19495959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 19517396 - 19517355
Alignment:
| Q |
180 |
tgaaggttgtttgcaacccactcaagtttgcagtttctccaa |
221 |
Q |
| |
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|||||||||||||||| |||||||| |||| ||||||||||| |
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| T |
19517396 |
tgaaggttgtttgcaatccactcaaatttggagtttctccaa |
19517355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 46536887 - 46536965
Alignment:
| Q |
180 |
tgaaggttgtttgcaacccactcaagtttgcagtttctccaaatgacaacaacacaacaaaccctgggattttcttgga |
258 |
Q |
| |
|
|||| |||||||||||||| |||| |||| |||||||| |||||||| ||||||| ||| | |||||||||| ||||| |
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|
| T |
46536887 |
tgaaagttgtttgcaaccctctcaggtttacagtttcttcaaatgacttcaacacatcaacctctgggattttattgga |
46536965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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