View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5840_high_23 (Length: 252)
Name: NF5840_high_23
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 21623999 - 21624113
Alignment:
| Q |
7 |
agtgagatgaaagaatcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaa |
106 |
Q |
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| T |
21623999 |
agtgagatgaaagaatcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaa |
21624098 |
T |
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| Q |
107 |
atgagttggtaatgc |
121 |
Q |
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| T |
21624099 |
atgagttggtaatgc |
21624113 |
T |
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Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 21624142 - 21624226
Alignment:
| Q |
164 |
tttctttcttaaaatttagacggggtaaaactcaaccctacaaaatctgtttgtaatataatgatgtctctcaattaaaatcgca |
248 |
Q |
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| T |
21624142 |
tttctttcttaaaatttagaccgggtaaaactcaaccctacaaaatctgtttgtaatataatgatgtctctcaattaaaatcgca |
21624226 |
T |
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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 40466228 - 40466130
Alignment:
| Q |
21 |
atcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggtaat |
119 |
Q |
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| T |
40466228 |
atcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaacttggaaaagaattggtaat |
40466130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 28272022 - 28271927
Alignment:
| Q |
22 |
tcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggta |
117 |
Q |
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|||||||| |||||| ||||||| |||||||| ||||||||||| || || ||||| ||| |||||||||| ||||| ||||||||||| |||||| |
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| T |
28272022 |
tcaaagttcaagagggtttgtgtcttttgtggaagtagtcctggcaagaaaagtagttatcaagatgctgccattgaacttggaaatgaattggta |
28271927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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