View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5840_high_24 (Length: 251)
Name: NF5840_high_24
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840_high_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 11976132 - 11975887
Alignment:
| Q |
6 |
agtgagaagaaccaacttataacttctcttgaaaaaatccaagacctggttaagaaccacgtccaacgtcatgaggttctgtccaaccttaaaactgccc |
105 |
Q |
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| T |
11976132 |
agtgacaagaaccaacttataacttctcttgaaaaaatccaagacctggttaagaaccacgtccaacgtcatgaggttctgtccaaccttaaaactgccc |
11976033 |
T |
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| Q |
106 |
tcaaagatctgaacaaattggtggaggaactcgatgccggtattcttaagcctcagaaaagaactttctctccgtttcaagccgatcgtcataagcatca |
205 |
Q |
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| T |
11976032 |
tcaaagatctgaacaaattggtggaggaactcgatgccggtattcttaagcctcagaaaagaactttctctccgtttcaagccgatcgtcataagcatca |
11975933 |
T |
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| Q |
206 |
gcttaaagccatcaactcaagaattcaaaatgccataaaagatctc |
251 |
Q |
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| T |
11975932 |
gcttaaagccatcaactcaagaattcaaaatgccataaaagatctc |
11975887 |
T |
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