View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5840_high_26 (Length: 237)
Name: NF5840_high_26
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7344471 - 7344691
Alignment:
| Q |
1 |
agaatcatcccatgttgatgnnnnnnnggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattgtacccatgtaaagtctcttttcatg |
100 |
Q |
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| T |
7344471 |
agaatcatcccatgttgatgtttttttggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattgtacccatgtgaagtctcttttcatg |
7344570 |
T |
|
| Q |
101 |
ttctcgtttcttctaccaatgaagtgagcgtttatgtggaggttgttatcggagacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtga |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7344571 |
ttcttgtttcttctaccaatgaagtgagcgtttatgtggaggttgttatcggaaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtga |
7344670 |
T |
|
| Q |
201 |
ttccatcaccaccaatgaaac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
7344671 |
ttccatcaccaccaatgaaac |
7344691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11664025 - 11663805
Alignment:
| Q |
1 |
agaatcatcccatgttgatgnnnnnnnggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattgtacccatgtaaagtctcttttcatg |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
11664025 |
agaatcatcccatgttgatgttttttgggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatg |
11663926 |
T |
|
| Q |
101 |
ttctcgtttcttctaccaatgaagtgagcgtttatgtggaggttgttatcggagacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtga |
200 |
Q |
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| T |
11663925 |
ttctcatttcttctacctatgaaatgagcattgatgtggaggttgttatcagaaacaaggcagaagttgttgtctttcttgccatgaaagtaaaaagtga |
11663826 |
T |
|
| Q |
201 |
ttccatcaccaccaatgaaac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
11663825 |
ttccatcaccaccaatgaaac |
11663805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 11655541 - 11655348
Alignment:
| Q |
28 |
ggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattgtacccatgtaaagtctcttttcatgttctcgtttcttctaccaatgaagtga |
127 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
11655541 |
ggcaccaaggaagagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcgtttcttctacctatgaaatga |
11655442 |
T |
|
| Q |
128 |
gcgtttatgtggaggttgttatcggagacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatcaccaccaatgaaac |
221 |
Q |
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| T |
11655441 |
gcattgatgtgtaggtttttgtcagaaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatctccaccaatgaaac |
11655348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 11669309 - 11669116
Alignment:
| Q |
28 |
ggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattgtacccatgtaaagtctcttttcatgttctcgtttcttctaccaatgaagtga |
127 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
11669309 |
ggcaccaaggaagagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcgtttcttctacctatgaaatga |
11669210 |
T |
|
| Q |
128 |
gcgtttatgtggaggttgttatcggagacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatcaccaccaatgaaac |
221 |
Q |
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|| || ||||| ||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11669209 |
gcattgatgtgtaggtttttgtcagaaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatctccaccaatgaaac |
11669116 |
T |
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