View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5840_high_3 (Length: 669)

Name: NF5840_high_3
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5840_high_3
NF5840_high_3
[»] chr2 (1 HSPs)
chr2 (12-648)||(37136037-37136673)


Alignment Details
Target: chr2 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 12 - 648
Target Start/End: Original strand, 37136037 - 37136673
Alignment:
Q  12 catcatcaagaagctgacctcaatcattgtctgaatatcaaattgccatttttgtttctttctttcaaatatgtgccctactttctaaaagctctcattt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37136037 catcatcaagaagctgacctcaatcattgtctgaatatcaaattgccatttttgtttgtttctttcaaatatgtgccctactttctaaaagctctcattt 37136136  T
Q  112 aaggctaaaatactcatctttatgtcttttgtgtactttgcttgatacaaattatttgttgagaagtttgcttggtagaacttgtttattgtttctcgat 211  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37136137 aaggttaaaatactcatctttatgtcttttgtgtactttgcttgatacaaattatttgttgagaagtttgcttggtagaacttgtttattgtttctcggt 37136236  T
Q  212 aaagtattaagagttcaattcgatctttactgcacacaaattaactattaacatttgtttatnnnnnnntctttttccgagcacctgaaaatgttttgtt 311  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||| |||||||||||||||||||||||||    
T  37136237 aaagtattaagagttcaattcgatctttactgcaaacaaattaactattaacatttgtttataaaaaaatctttctccgagcacctgaaaatgttttgtt 37136336  T
Q  312 attttttcagttgcccggaagaacagataacgaaatcaaaaacttttggaacacaagaatgaaaaggtgtcaaagagccggcttacctctttatcctcca 411  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37136337 gttttttcagttgcccggaagaacagataacgaaatcaaaaacttttggaacacaagaatgaaaaggcgtcaaagagccggcttacctctttatcctcca 37136436  T
Q  412 gaaatccaagcagaagctattgcatacaatgataaactattgcaactacaacatcaacctttatcttcttcatcattatcattttctttactcttatctt 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37136437 gaaatccaagcagaagctattgcatacaatgataaactattgcaactacaacatcaacctttatcttcttcatcattatcattttctttactcttatctt 37136536  T
Q  512 cttgttaccctaagaagattgatgatccaaaccattatgattataatcttctagagaacaactctggttctgctaataatcacaacaccaatccatgtcc 611  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37136537 cttgttaccctaagaagattgatgatccaaaccattatgattataatcttctagagaacaactctggttctgctaacaatcacaacaccaatccatgtcc 37136636  T
Q  612 acaattcaacttttccaatgatgaaaacattgagatt 648  Q
    |||||||||||||||||||||||||||||||||||||    
T  37136637 acaattcaacttttccaatgatgaaaacattgagatt 37136673  T

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