View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5840_high_4 (Length: 653)

Name: NF5840_high_4
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5840_high_4
NF5840_high_4
[»] chr1 (3 HSPs)
chr1 (313-636)||(2625603-2625910)
chr1 (10-190)||(2626221-2626401)
chr1 (48-194)||(2626002-2626148)
[»] chr6 (2 HSPs)
chr6 (453-636)||(28840933-28841117)
chr6 (573-635)||(28537385-28537447)
[»] chr4 (3 HSPs)
chr4 (60-181)||(33661127-33661257)
chr4 (573-635)||(13249647-13249709)
chr4 (573-635)||(33685959-33686021)
[»] chr7 (4 HSPs)
chr7 (573-635)||(17352332-17352394)
chr7 (48-110)||(22367106-22367168)
chr7 (10-49)||(17352490-17352529)
chr7 (138-176)||(22367088-22367126)
[»] chr3 (2 HSPs)
chr3 (10-57)||(51242176-51242223)
chr3 (11-51)||(51242249-51242289)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 313 - 636
Target Start/End: Complemental strand, 2625910 - 2625603
Alignment:
Q  313 ctgtacacataaaataaatcgtttcaaaaatctatattaaagcgcatgtgttggtgattgttagatgaaggcatatcctcattcatatgcaattgtttca 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2625910 ctgtacacataaaataaatcgtttcaaaaatctatattaaagcgcatgtgttggtgattgttagatgaaggcatatcctcattcatacgcaattgtttca 2625811  T
Q  413 cgtaatgacatatgtatggagaataaatagtggaagacatttagctcatgtgttggagtacaagacaaagcacgtggtggaactcttcagccacaattta 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  2625810 cgtaatgacatatgtatggagaataaatagtggaagacatttagctcatgtgatggagtacaagacaaagcacatggtggaactcttcagccacaattta 2625711  T
Q  513 attgttggnnnnnnnnnncaatatgnnnnnnncaataccagaagaataagaaaacaacaattagtagtgttacaaaggtgacaaagctaaatgcacataa 612  Q
    ||||||||           || |         |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2625710 attgttgg-----------aaaa-----aaaacaatactagaagaataagaaaacaacaattagtagtgttacaaaggtgacaaagctaactgcacataa 2625627  T
Q  613 atgaacaactacaataccaatatt 636  Q
    ||||||||||||||||||||||||    
T  2625626 atgaacaactacaataccaatatt 2625603  T

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Target: chr1; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 2626401 - 2626221
Alignment:
Q  10 agaagaagaaatagtgaaagactctttgaacaacaatgaagaaaaaattattaatgaatgagttaaagaaaaataacttaccattgtccaactcatggtc 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2626401 agaagaagaaataatgaaagactctttgaacaacaatgaagaaaaaattattaatgaatgagttaaagaaaaataacttaccattgtccaactcatggtc 2626302  T
Q  110 tatgttgtctctcaaattcatatctatgccattgtccaaatcatggtatgtgacttcaatattttcttgaattgctccttg 190  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||| ||||||    
T  2626301 tatgttgtctcccaaattcatatctatgctattgttcaaatcatggtccgtgacttcaatattttcttgaattgatccttg 2626221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 2626148 - 2626002
Alignment:
Q  48 aagaaaaaattattaatgaatgagttaaagaaaaataacttaccattgtccaactcatggtctatgttgtctctcaaattcatatctatgccattgtcca 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2626148 aagaaaaaattattaatgaatgagttaaagaaaaataacttaccattgtccaactcatggtctatgttgtctcccaaattcatatctatgccattgtcca 2626049  T
Q  148 aatcatggtatgtgacttcaatattttcttgaattgctccttgcatg 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2626048 aatcatggtatgtgacttcaatattttcttgaattgctccttgcatg 2626002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 453 - 636
Target Start/End: Complemental strand, 28841117 - 28840933
Alignment:
Q  453 ttagctcatgtgttggagtacaagacaaagcacgtggtggaactcttcagccacaatttaattgttggnnnnnnnnnn-caatatgnnnnnnncaatacc 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||           |||||||       |||||||    
T  28841117 ttagctcatgtgttggagtacaagacaaagcacgtggtggaactcctcagccacaatttaattgttggaagaaaaaaaacaatatgaaaaaaacaatacc 28841018  T
Q  552 agaagaataagaaaacaacaattagtagtgttacaaaggtgacaaagctaaatgcacataaatgaacaactacaataccaatatt 636  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  28841017 agaagaataagaaaacaacaattagtagtgttacaaaggtgacaaaactaaatacacataaatgaacaactacaataccaatatt 28840933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 573 - 635
Target Start/End: Complemental strand, 28537447 - 28537385
Alignment:
Q  573 ttagtagtgttacaaaggtgacaaagctaaatgcacataaatgaacaactacaataccaatat 635  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28537447 ttagtagtgtaacaaaggtgacaaagctaaatgcacataaatgaacaaatacaataccaatat 28537385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 33661127 - 33661257
Alignment:
Q  60 ttaatgaatgagttaaagaaaaataacttaccattgtccaactcatggtctatg---------ttgtctctcaaattcatatctatgccattgtccaaat 150  Q
    |||||||||||| |||||||||||||||||||||||||||| |||| || | ||         ||||||  ||||||||||||||| |||||||||||||    
T  33661127 ttaatgaatgagctaaagaaaaataacttaccattgtccaaatcattgtttgtgacttctaaattgtcttccaaattcatatctataccattgtccaaat 33661226  T
Q  151 catggtatgtgacttcaatattttcttgaat 181  Q
    ||||||||||||||||| |||||||||||||    
T  33661227 catggtatgtgacttcagtattttcttgaat 33661257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 573 - 635
Target Start/End: Complemental strand, 13249709 - 13249647
Alignment:
Q  573 ttagtagtgttacaaaggtgacaaagctaaatgcacataaatgaacaactacaataccaatat 635  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  13249709 ttagtagtgtaacaaaggtgacaaagctaaatgcacataaatgaacaaatacaatactaatat 13249647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 573 - 635
Target Start/End: Original strand, 33685959 - 33686021
Alignment:
Q  573 ttagtagtgttacaaaggtgacaaagctaaatgcacataaatgaacaactacaataccaatat 635  Q
    |||||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  33685959 ttagtagtgtaagaaaggggacaaagctaaatgcacataaatgaacaaatacaataccaatat 33686021  T

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Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 573 - 635
Target Start/End: Complemental strand, 17352394 - 17352332
Alignment:
Q  573 ttagtagtgttacaaaggtgacaaagctaaatgcacataaatgaacaactacaataccaatat 635  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17352394 ttagtagtgtaacaaaggtgacaaagctaaatgcacataaatgaacaaatacaataccaatat 17352332  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 22367168 - 22367106
Alignment:
Q  48 aagaaaaaattattaatgaatgagttaaagaaaaataacttaccattgtccaactcatggtct 110  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||    
T  22367168 aagaaaaaattcttaatgaatgagttaaataaaaacaacttaccattgtccaaatcatggtct 22367106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 17352529 - 17352490
Alignment:
Q  10 agaagaagaaatagtgaaagactctttgaacaacaatgaa 49  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  17352529 agaagaagaaatagtggaagactctttggacaacaatgaa 17352490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 22367126 - 22367088
Alignment:
Q  138 ccattgtccaaatcatggtatgtgacttcaatattttct 176  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  22367126 ccattgtccaaatcatggtctgggacttcaatattttct 22367088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 51242176 - 51242223
Alignment:
Q  10 agaagaagaaatagtgaaagactctttgaacaacaatgaagaaaaaat 57  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51242176 agaagaagaaatagtgaaagactctttgaacaacaatgaagaagaaat 51242223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 51242249 - 51242289
Alignment:
Q  11 gaagaagaaatagtgaaagactctttgaacaacaatgaaga 51  Q
    ||||||||||||||| ||||||| |||||||||| ||||||    
T  51242249 gaagaagaaatagtggaagactccttgaacaacattgaaga 51242289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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