View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5840_high_9 (Length: 353)

Name: NF5840_high_9
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5840_high_9
NF5840_high_9
[»] chr4 (4 HSPs)
chr4 (1-349)||(54441461-54441805)
chr4 (8-47)||(50418312-50418351)
chr4 (6-55)||(36491716-36491765)
chr4 (19-55)||(28952241-28952277)
[»] chr5 (4 HSPs)
chr5 (6-53)||(37036169-37036216)
chr5 (6-55)||(11875903-11875952)
chr5 (6-55)||(14478287-14478336)
chr5 (6-55)||(29654173-29654222)
[»] chr8 (8 HSPs)
chr8 (8-55)||(2433740-2433787)
chr8 (8-55)||(32986865-32986912)
chr8 (9-55)||(32986056-32986102)
chr8 (26-55)||(981123-981152)
chr8 (14-55)||(6655970-6656011)
chr8 (14-55)||(6736372-6736413)
chr8 (7-55)||(9407129-9407177)
chr8 (6-54)||(11925424-11925471)
[»] chr6 (3 HSPs)
chr6 (6-36)||(27978484-27978514)
chr6 (14-55)||(23133613-23133654)
chr6 (6-58)||(17438645-17438697)
[»] scaffold0164 (1 HSPs)
scaffold0164 (6-55)||(11037-11086)
[»] chr3 (1 HSPs)
chr3 (6-55)||(37671607-37671656)
[»] chr2 (1 HSPs)
chr2 (6-55)||(43679397-43679446)
[»] chr1 (2 HSPs)
chr1 (6-55)||(91519-91568)
chr1 (14-55)||(19697821-19697862)
[»] chr7 (1 HSPs)
chr7 (15-55)||(12422820-12422860)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 54441805 - 54441461
Alignment:
Q  1 ttaagacatgaactaaatatgaatttttatgtttttgacacataaaaattcatataatattataaacattcgtgtgtgtaaaaatcatttagaaatttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  54441805 ttaagacatgaactaaatatgaatttttatgtttttgacacttaaaaattcatataatattataaacattcgtgt----aaaaatcatttagaaatttaa 54441710  T
Q  101 agatactcatcacctaacttaaaaacaaagaccaaaagtatggacataaaattttggtaggaaccacaaatatatttgataggaaccacaatttatttag 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  54441709 aaatactcatcacctaacttaaaaacaaagaccaaaagtatggacataaaacttttgtaggaaccacaaatatatttgataggaaccacaatttatttag 54441610  T
Q  201 aaaataaattttatagggaccacaatcgtctaaatattgtttcaacacgattccaataatacatattttaaaaatttgctccaaaccaagctatattgga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54441609 aaaataaattttatagggaccacaatcgtctaaatattgtttcaacacgattccaataatacatattttaaaaatttgctccaaaccaagctatattgga 54441510  T
Q  301 attccccgcttcactttaccaccactcgttatccctacgacatggtctc 349  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  54441509 attccccgcttcactttaccaccacccgttttccctacgacatggtctc 54441461  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 50418312 - 50418351
Alignment:
Q  8 atgaactaaatatgaatttttatgtttttgacacataaaa 47  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  50418312 atgaattaaatatgaatttttatgtttttgacacttaaaa 50418351  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 36491716 - 36491765
Alignment:
Q  6 acatgaactaaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    ||||||| ||||||| |||||||||| |||||||||  ||||||||||||    
T  36491716 acatgaattaaatataaatttttatgattttgacactaaaaaattcatat 36491765  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 28952241 - 28952277
Alignment:
Q  19 atgaatttttatgtttttgacacataaaaattcatat 55  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  28952241 atgaatttttatgtttttgacacttaaaaatttatat 28952277  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 37036216 - 37036169
Alignment:
Q  6 acatgaactaaatatgaatttttatgtttttgacacataaaaattcat 53  Q
    ||||||| |||||||||||||| ||||||||||||| |||||||||||    
T  37036216 acatgaattaaatatgaattttaatgtttttgacacttaaaaattcat 37036169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 11875952 - 11875903
Alignment:
Q  6 acatgaactaaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    ||||||| ||||||||||||||||| ||||||||   |||||||||||||    
T  11875952 acatgaattaaatatgaatttttatatttttgacgattaaaaattcatat 11875903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 14478336 - 14478287
Alignment:
Q  6 acatgaactaaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    ||||||| ||||||||||||||||| ||||| |||  |||||||||||||    
T  14478336 acatgaattaaatatgaatttttatattttttacagttaaaaattcatat 14478287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 29654173 - 29654222
Alignment:
Q  6 acatgaactaaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    ||||||| ||||||||||||||||| ||||||||   |||||||||||||    
T  29654173 acatgaattaaatatgaatttttatatttttgacggttaaaaattcatat 29654222  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 2433787 - 2433740
Alignment:
Q  8 atgaactaaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    ||||| ||||||||||||||||||||||||  || |||||||||||||    
T  2433787 atgaattaaatatgaatttttatgtttttggtacttaaaaattcatat 2433740  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 32986865 - 32986912
Alignment:
Q  8 atgaactaaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    ||||| ||||||||||||||||||||||| || | |||||||||||||    
T  32986865 atgaattaaatatgaatttttatgtttttaacgcttaaaaattcatat 32986912  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 32986056 - 32986102
Alignment:
Q  9 tgaactaaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    |||| |||||||||||||||||||||||  ||| |||||||||||||    
T  32986056 tgaattaaatatgaatttttatgtttttagcacttaaaaattcatat 32986102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 981123 - 981152
Alignment:
Q  26 tttatgtttttgacacataaaaattcatat 55  Q
    ||||||||||||||||||||||||||||||    
T  981123 tttatgtttttgacacataaaaattcatat 981152  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 6656011 - 6655970
Alignment:
Q  14 taaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    |||||||||||||||||||||||||||   ||||||||||||    
T  6656011 taaatatgaatttttatgtttttgacattgaaaaattcatat 6655970  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 6736413 - 6736372
Alignment:
Q  14 taaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    |||||||||||||||||||||||||||   ||||||||||||    
T  6736413 taaatatgaatttttatgtttttgacattgaaaaattcatat 6736372  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 9407177 - 9407129
Alignment:
Q  7 catgaactaaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    |||||| |||||||||||||||||||||||| | | |||||||| ||||    
T  9407177 catgaattaaatatgaatttttatgtttttggcgcttaaaaatttatat 9407129  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 11925424 - 11925471
Alignment:
Q  6 acatgaactaaatatgaatttttatgtttttgacacataaaaattcata 54  Q
    ||||||| |||||||||||||| |||||||||||||  |||||||||||    
T  11925424 acatgaattaaatatgaatttt-atgtttttgacactgaaaaattcata 11925471  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 27978484 - 27978514
Alignment:
Q  6 acatgaactaaatatgaatttttatgttttt 36  Q
    |||||||||||||||||||||||||||||||    
T  27978484 acatgaactaaatatgaatttttatgttttt 27978514  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 23133613 - 23133654
Alignment:
Q  14 taaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    |||||||| |||||||||||||| |||||||||| |||||||    
T  23133613 taaatatgcatttttatgtttttaacacataaaagttcatat 23133654  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 17438645 - 17438697
Alignment:
Q  6 acatgaactaaatatgaatttttatgtttttgacacataaaaattcatataat 58  Q
    ||||||| | ||||||||||||||| ||||||| |  ||||||||||||||||    
T  17438645 acatgaatttaatatgaatttttatatttttgataattaaaaattcatataat 17438697  T

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Target: scaffold0164 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 11086 - 11037
Alignment:
Q  6 acatgaactaaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    ||||||| ||||||||||||||||| ||||| |||  |||||||||||||    
T  11086 acatgaattaaatatgaatttttatattttttacagttaaaaattcatat 11037  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 37671607 - 37671656
Alignment:
Q  6 acatgaactaaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    ||||||| ||||||||||||||||||||||||   | |||||||||||||    
T  37671607 acatgaattaaatatgaatttttatgtttttggagcttaaaaattcatat 37671656  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 43679446 - 43679397
Alignment:
Q  6 acatgaactaaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    ||||||| ||||||||||||||||| |||||||||  ||||| |||||||    
T  43679446 acatgaattaaatatgaatttttatatttttgacatttaaaacttcatat 43679397  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 91568 - 91519
Alignment:
Q  6 acatgaactaaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    ||||||| ||||||||||||||||| ||||||| |  |||||||||||||    
T  91568 acatgaattaaatatgaatttttatatttttgatagttaaaaattcatat 91519  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 19697821 - 19697862
Alignment:
Q  14 taaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    |||||||||||||||||||||||||||  ||||| |||||||    
T  19697821 taaatatgaatttttatgtttttgacatttaaaatttcatat 19697862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 12422860 - 12422820
Alignment:
Q  15 aaatatgaatttttatgtttttgacacataaaaattcatat 55  Q
    ||||||||||||||||  ||||||||| |||||||||||||    
T  12422860 aaatatgaatttttataattttgacacttaaaaattcatat 12422820  T

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