View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5840_low_10 (Length: 347)
Name: NF5840_low_10
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5840_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 44 - 326
Target Start/End: Original strand, 33249133 - 33249415
Alignment:
| Q |
44 |
ctaaaacgttatttgatactgaaatatctacaaccattgaaagtccaatatctattttattttgactacgataatcttccctgggaacagcataatagtg |
143 |
Q |
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| T |
33249133 |
ctaaaacgttatttgatactgaaatatctacaaccattgaaagtccaatatctattttatttcgactacgataatcttccctgggaacagcataatagtg |
33249232 |
T |
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| Q |
144 |
ttccacagtaactttgtaaggattcatatctatatgcgtgctattctcttcaacgacaataagacccctacctcctccatgaaagaaaatagacgtcttt |
243 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33249233 |
tttcacagtaactttgtaaggattcatatctatatgcgtgctattctcttcaacgacaataagacccctacctcctccatgaaagaaaatagacgtcttt |
33249332 |
T |
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| Q |
244 |
gtaacgaatccacgactatcatgtttctcagtttgaatcattgtatttgtatcagaaacttgtcttatagattcgaagtcaat |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33249333 |
gtaacgaatccacgactatcatgtttctcagtttgaatcattgtatttgtatcagaaacttgtcttatagattcgaagtcaat |
33249415 |
T |
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